PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v0429470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | SBP | ||||||||
Protein Properties | Length: 187aa MW: 21290.8 Da PI: 9.4006 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 137.3 | 4.6e-43 | 67 | 143 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cq+e+C adl++ak+yhrrhkvCe+hskapvv+v+gl+qrfCqqCsrfh+l efDe+krsCrrrLa+hnerrrk+++ Lj3g3v0429470.1 67 CQAERCGADLTDAKRYHRRHKVCEFHSKAPVVVVAGLRQRFCQQCSRFHDLAEFDEAKRSCRRRLAGHNERRRKSNP 143 **************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.9E-36 | 59 | 128 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.778 | 64 | 141 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.23E-40 | 65 | 144 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.9E-32 | 67 | 140 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010321 | Biological Process | regulation of vegetative phase change | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MEARSIERKR TLMMEKVRKN KTVEEDMENE VEEEDETGGG DVIFTEEEKK KGRRGSSGGG 60 GVSPPSCQAE RCGADLTDAK RYHRRHKVCE FHSKAPVVVV AGLRQRFCQQ CSRFHDLAEF 120 DEAKRSCRRR LAGHNERRRK SNPEASNEGS KGHLHPKETT QCRIADERGR VQMNLPGSSG 180 YKSFNIR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-38 | 55 | 140 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00634 | PBM | Transfer from PK22320.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v0429470.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP010406 | 0.0 | AP010406.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT41F22, TM1776b, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020239326.1 | 1e-88 | squamosa promoter-binding protein 1 | ||||
Swissprot | Q38740 | 4e-43 | SBP2_ANTMA; Squamosa promoter-binding protein 2 | ||||
TrEMBL | A0A371FIT5 | 4e-88 | A0A371FIT5_MUCPR; Squamosa promoter-binding-like protein 4 (Fragment) | ||||
STRING | GLYMA12G27330.1 | 2e-80 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF535 | 34 | 153 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53160.2 | 2e-42 | squamosa promoter binding protein-like 4 |
Publications ? help Back to Top | |||
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