PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v0381570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | DBB | ||||||||
Protein Properties | Length: 270aa MW: 29788.5 Da PI: 4.552 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24.8 | 4.6e-08 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ +e+ +++ C ++ lC++C +e+H H++ Lj3g3v0381570.1 4 QCDACEKAPATVICCADEAALCAQCDVEIHAAnklaskHQR 44 7*****************************65667777765 PP | |||||||
2 | zf-B_box | 28 | 4.7e-09 | 53 | 86 | 2 | 35 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHk 35 + +kC+ ++ek + +fC +++ l+C+dC + +H Lj3g3v0381570.1 53 KLPKCDICQEKTAFIFCVEDRALFCQDCDEPIHA 86 789***************************9994 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.414 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.32E-7 | 3 | 47 | No hit | No description |
SMART | SM00336 | 2.6E-10 | 4 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 7.9E-6 | 4 | 44 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.9E-13 | 52 | 99 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.015 | 52 | 99 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 7.6E-8 | 52 | 95 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.32E-8 | 55 | 98 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MKIQCDACEK APATVICCAD EAALCAQCDV EIHAANKLAS KHQRLLLESL SNKLPKCDIC 60 QEKTAFIFCV EDRALFCQDC DEPIHAPGSI SANHQRFLAT GIKVAGSSKC TKDDEKSHLE 120 PPSRNASKIS AKIPPQQVPN FTEKIPPQQV PNFTEKVPPQ QVPNFTSSWA VDDLLDMELS 180 SFDSPDKYAQ KDSLQFGELE WLADDGLFGD QFSQEALAAA EVPQLPATYT SSNVASYRTS 240 KSPMSNKKAR IEVLHYDEDD DEYFTVPNLG |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: High expression in leaves and lower in roots and flowers. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation (PubMed:17605755, PubMed:18540109, PubMed:21685177). BBX24/STO and BBX25/STH function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX24/STO acts additively with BBX25/STH during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). Functions as negative regulator of photomorphogenic UV-B responses by interacting with both COP1 and HY5 (PubMed:22410790). May act as a transcription factor in the salt-stress response (PubMed:12909688). {ECO:0000269|PubMed:12909688, ECO:0000269|PubMed:17605755, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:21685177, ECO:0000269|PubMed:22410790, ECO:0000269|PubMed:23624715}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v0381570.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak before dawn. {ECO:0000269|PubMed:17605755}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT137633 | 0.0 | BT137633.1 Lotus japonicus clone JCVI-FLLj-9E6 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001242424.2 | 1e-137 | B-box zinc finger protein | ||||
Swissprot | Q96288 | 1e-88 | BBX24_ARATH; B-box zinc finger protein 24 | ||||
TrEMBL | I3SAY6 | 0.0 | I3SAY6_LOTJA; Uncharacterized protein | ||||
STRING | GLYMA13G41980.1 | 1e-136 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3438 | 31 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06040.1 | 5e-91 | DBB family protein |
Publications ? help Back to Top | |||
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