PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v0028570.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 277aa    MW: 31046.3 Da    PI: 6.2472
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v0028570.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.82.9e-1195140555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h  +Er+RR ++ ++f  L  l+P +     kK +K++iL++A+ Y+k+Lq
  Lj3g3v0028570.1  95 HAVAERKRRLELTQGFIALSALIPGL-----KKIDKVSILKEATTYVKQLQ 140
                      899***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.57390139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.95E-1594150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.39E-1095144No hitNo description
Gene3DG3DSA:4.10.280.103.8E-1595150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.3E-995140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-1296145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MESPWKNCLP NVEMEDGDSF NINNEEHLFL EEILQQFALS SETGSLANNL LNSTDGGSKG  60
VAIDESQPAP ETHDDQAGGR RERRKGKSSS GHLDHAVAER KRRLELTQGF IALSALIPGL  120
KKIDKVSILK EATTYVKQLQ NRVKEMEEQS AKKIIVESMS VLNDAGFHYD QGIVPYNMNS  180
DNRHKLNDAA LPEVEARVME KQVLIRIHCD GNQDILLKTL SHVTSLDLSI VSHTMLPFRK  240
ISLDVTIIAQ MGDNYKITLK DLVRSLRKVL LESTDMK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
182102RRKGKSSSGHLDHAVAERKRR
298103ERKRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v0028570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019457185.14e-75PREDICTED: transcription factor NAI1-like
TrEMBLA0A4P1R6P05e-67A0A4P1R6P0_LUPAN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2379533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.14e-37bHLH family protein