PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj2g3v3058520.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

LBD

Protein Properties

Length: 352aa MW: 40360.2 Da PI: 7.0579

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj2g3v3058520.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	30.4	1.1e-09	8	55	1	49
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal 49 +CaaCk+lrr+C+++Cv+ap + + ++k +++ ++ F n+ +l ++l Lj2g3v3058520.1 8 RCAACKILRRNCTQNCVFAPLY-EPHNKMLQFQQECFQSPNIPNLFNNL 55 6*******************96.33446677778888888888888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	8.928	7	115	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-7	8	56	IPR004883	Lateral organ boundaries, LOB
SMART	SM00512	2.3E-4	190	298	IPR001232	S-phase kinase-associated protein 1-like
Gene3D	G3DSA:3.30.710.10	2.1E-17	191	324	No hit	No description
Pfam	PF03931	1.5E-9	192	250	IPR016073	SKP1 component, POZ domain
SuperFamily	SSF54695	7.06E-8	192	251	IPR011333	SKP1/BTB/POZ domain
SuperFamily	SSF81382	3.53E-5	273	325	IPR016072	SKP1 component, dimerisation

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MESGRNSRCA ACKILRRNCT QNCVFAPLYE PHNKMLQFQQ ECFQSPNIPN LFNNLVSEMA 60 ATTQSEVPSG AVDSTGKAKH RMLFNEEEGY KDGLMHLHFM NLCTSEHGRL LVKQRLVACS 120 SIEGVIDIKT CKKNFKDWFK QIRREPDNQF QKHLNDFITL MNSPDFRIFC YNIYQSTERV 180 PLLPTPHVSQ DTISLRSSDK VVFEMNKMVA ISESKLLKDV IECHPNEDEI PVPRVSSLVL 240 PEVISFCEKK LKFDQLFKSI GEILKTVFIP YQAWVTRFVN NNHSIFSHLH DAANFLNIPS 300 LFEFTSLFTG LQDRGENENK IQETSKWYSA SSMLSTMGID IGEASYISLN FG

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MESGRNSRCA ACKILRRNCT QNCVFAPLYE PHNKMLQFQQ ECFQSPNIPN LFNNLVSEMA  60
ATTQSEVPSG AVDSTGKAKH RMLFNEEEGY KDGLMHLHFM NLCTSEHGRL LVKQRLVACS  120
SIEGVIDIKT CKKNFKDWFK QIRREPDNQF QKHLNDFITL MNSPDFRIFC YNIYQSTERV  180
PLLPTPHVSQ DTISLRSSDK VVFEMNKMVA ISESKLLKDV IECHPNEDEI PVPRVSSLVL  240
PEVISFCEKK LKFDQLFKSI GEILKTVFIP YQAWVTRFVN NNHSIFSHLH DAANFLNIPS  300
LFEFTSLFTG LQDRGENENK IQETSKWYSA SSMLSTMGID IGEASYISLN FG

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.2990	0.0	cell culture\| pod\| protoplast\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj2g3v3058520.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP009645	0.0	AP009645.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjB15M17, BM2010, complete sequence.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	1e-08	ASYMMETRIC LEAVES 2-like 1