PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj2g3v3055290.2

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

HB-other

Protein Properties

Length: 494aa MW: 56183.4 Da PI: 7.5801

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj2g3v3055290.2	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.5	5.4e-19	20	75	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR t+ ql +Le+++ ++yps+e++ +LA+++gLte+qV+ WF+ rR k+k+ Lj2g3v3055290.2 20 KKRKLKTPAQLMALEKFYDAHKYPSEEKKLKLAEEIGLTEKQVSGWFCHRRLKDKR 75 89****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-20	2	75	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.99E-18	15	80	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.281	16	76	IPR001356	Homeobox domain
SMART	SM00389	4.3E-19	18	80	IPR001356	Homeobox domain
Pfam	PF00046	1.4E-16	20	75	IPR001356	Homeobox domain
CDD	cd00086	9.34E-17	20	75	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence Send to blast
MEESSEVKSE ENKVSMEKNK KRKLKTPAQL MALEKFYDAH KYPSEEKKLK LAEEIGLTEK 60 QVSGWFCHRR LKDKRLLKDE AVANGRQDRS SGVIQDRGSG LGQDSCGSSK HGDNKHLDPK 120 EAESHGIYNQ DISVADMTYG RRDYYPENGR GMDDTSSESS SFLQERLYSQ GQDPYDMEPS 180 RHRTPSGSLP PLNPKSATKM GYKPSGYLKV KGEIEHAAIT AVKKQLGRHY LEDGPLLGVE 240 FDPLPPGAFE FQTEYPVHEA YHVANPVHLN SPEVPAVKRQ PNLSSRHDSY YTKFSSQDSH 300 MEGVDFGFLQ DYDVQDTQDK KARQDINYSQ TFYNDANNFP GRNSSQDLYE DSTREVSAYN 360 SSKNHKMGKG NKRGVEGMRS YSTSNHRDHY EDDIAVKPTD ILLLEYDNID PKNVQRSEHV 420 KSKPSNSIRK SRVPMDPEER GLSTRMAKEE VFKGDRKAKK KYRNADGVGM LSNEIAVLDV 480 LQNELKLVRH KNTM

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence Send to blast

MEESSEVKSE ENKVSMEKNK KRKLKTPAQL MALEKFYDAH KYPSEEKKLK LAEEIGLTEK  60
QVSGWFCHRR LKDKRLLKDE AVANGRQDRS SGVIQDRGSG LGQDSCGSSK HGDNKHLDPK  120
EAESHGIYNQ DISVADMTYG RRDYYPENGR GMDDTSSESS SFLQERLYSQ GQDPYDMEPS  180
RHRTPSGSLP PLNPKSATKM GYKPSGYLKV KGEIEHAAIT AVKKQLGRHY LEDGPLLGVE  240
FDPLPPGAFE FQTEYPVHEA YHVANPVHLN SPEVPAVKRQ PNLSSRHDSY YTKFSSQDSH  300
MEGVDFGFLQ DYDVQDTQDK KARQDINYSQ TFYNDANNFP GRNSSQDLYE DSTREVSAYN  360
SSKNHKMGKG NKRGVEGMRS YSTSNHRDHY EDDIAVKPTD ILLLEYDNID PKNVQRSEHV  420
KSKPSNSIRK SRVPMDPEER GLSTRMAKEE VFKGDRKAKK KYRNADGVGM LSNEIAVLDV  480
LQNELKLVRH KNTM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj2g3v3055290.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003545402.1	0.0	uncharacterized protein LOC100803515
Refseq	XP_028201159.1	0.0	uncharacterized protein LOC114385327
TrEMBL	A0A151U240	0.0	A0A151U240_CAJCA; Homeobox protein NANOG (Fragment)
STRING	GLYMA14G03850.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	1e-73	HB-other family protein