PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v2736610.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family M-type_MADS
Protein Properties Length: 269aa    MW: 30020.7 Da    PI: 5.4631
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v2736610.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF291.4e-091150442
                     -SHHHHHHHHHHHHHHHHHHHHHHHHHH.T-EEEEEEE-T CS
           SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLC.daevaviifss 42
                     +n+  r  t+ +R++g+lKK +EL +L  +++++ +i+s+
  Lj2g3v2736610.1 11 SNEDARRATYLRRKKGLLKKLKELTILSgGIDACALIYSE 50
                     6888899********************846********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-7160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.956139IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.68E-15293IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-5222IPR002100Transcription factor, MADS-box
PfamPF003192.8E-91250IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-52237IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MRGRVNLVYN SNEDARRATY LRRKKGLLKK LKELTILSGG IDACALIYSE FDDQPEKWPS  60
SPSELQRIIT KFRSYPELEQ GKKMLNQESL LDELILKANE KLAKRERKNR EIQMSLRMFE  120
LLTNENIIQT MSKYDLNQLA WTIDEKLKQV DQRIVDLNNN ASTSQSHAQT TDGAIRQGEA  180
QAQVVDPTLV AANGAIMQGE AQAQVADPTL VENGAIMQGE AQAQVADGAS MQAEAHVNHG  240
QSDEMNKKAT QDFSSFLKHI NGGDNDSSA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11530RRATYLRRKKGLLKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v2736610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004500453.12e-50agamous-like MADS-box protein AGL80
TrEMBLA0A1S2Y7724e-49A0A1S2Y772_CICAR; agamous-like MADS-box protein AGL80
STRINGXP_004500453.16e-50(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-32AGAMOUS-like 80