PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj2g3v2412470.2

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

LBD

Protein Properties

Length: 216aa MW: 23133.3 Da PI: 8.9541

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj2g3v2412470.2	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.1	1.1e-41	20	119	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++pe +r da++s+vyeA+ r+rdPvyG++g i++lqqq+++l+ael Lj2g3v2412470.2 20 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKMLMEVPEGQRADAANSMVYEANLRLRDPVYGCMGAISALQQQVQSLQAEL 113 7********************************************************************************************* PP DUF260 95 allkee 100 +++++e Lj2g3v2412470.2 114 HAVRAE 119 *99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.274	19	120	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.8E-42	20	117	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MGRRHFYGPA SGTTLNTVTP CAACKLLRRR CAEECPFSPY FSPHEPQKFA AVHKVFGASN 60 VSKMLMEVPE GQRADAANSM VYEANLRLRD PVYGCMGAIS ALQQQVQSLQ AELHAVRAEI 120 LKYKYREAAS LISSHHAALV SSVVEAASMP APNSSQSLSQ PHPPPSPAPP PPPRPLPSPS 180 VVLSSLSSSS ASSLYTPPKS TMSHGSISSE NVTYFV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-45	10	131	1	122	LOB family transfactor Ramosa2.1
5ly0_B	8e-45	10	131	1	122	LOB family transfactor Ramosa2.1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.20372	0.0	root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in shoots and roots and at low levels in flowers, but not in leaves or inflorescence stems. {ECO:0000269\|PubMed:12068116}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00283	DAP	Transfer from AT2G30340	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj2g3v2412470.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	2e-58	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019459531.1	1e-106	PREDICTED: LOB domain-containing protein 15-like isoform X2
Refseq	XP_019459532.1	1e-106	PREDICTED: LOB domain-containing protein 15-like isoform X2
Swissprot	Q9AT61	6e-73	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A1J7HLL2	1e-104	A0A1J7HLL2_LUPAN; Uncharacterized protein
STRING	GLYMA14G38280.2	1e-103	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	6e-64	LOB domain-containing protein 15

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]