PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1984740.1
Common NamePALM1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 251aa    MW: 27895.1 Da    PI: 6.838
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1984740.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.0001288110123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C+ C + F++   L  H+++H
  Lj2g3v1984740.1  88 YTCTFCRREFRSAQALGGHMNVH 110
                      9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.66E-685115No hitNo description
Gene3DG3DSA:3.30.160.600.00186113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.9E-588111IPR007087Zinc finger, C2H2
SMARTSM003550.006688110IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.15788115IPR007087Zinc finger, C2H2
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MAASEIGLLS MTQIQKLSPS PSTSSQHPQP NPNSASTTTT TTSATWMWNP SSRENHREEA  60
EEDESWEVRA FAEDTRNIMG TTWPPRSYTC TFCRREFRSA QALGGHMNVH RRDRARLHQV  120
HPPSSIPSHP TPPFINIPPH HQDLGLCLLY HLPSPNSTTV PNLNVNGESP STLLSISPYQ  180
PNNLMMQTCS SPSFNFPLAQ VSSPHINGSV PSYFCNSTTK LEQPPTLRSI DNGHLEELDL  240
ELRLGHKATP T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-1383110229superman protein
2l1o_A4e-1383110229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1984740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0102780.0AP010278.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT28I23, TM2035, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027362634.19e-96transcriptional regulator SUPERMAN
TrEMBLD7R6G51e-176D7R6G5_LOTJA; PALMATE-LIKE PENTAFOLIATA1
STRINGAES944395e-74(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35253155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.11e-34C2H2 family protein
Publications ? help Back to Top
  1. Chen J, et al.
    Control of dissected leaf morphology by a Cys(2)His(2) zinc finger transcription factor in the model legume Medicago truncatula.
    Proc. Natl. Acad. Sci. U.S.A., 2010. 107(23): p. 10754-9
    [PMID:20498057]