PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1984020.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family HD-ZIP
Protein Properties Length: 267aa    MW: 29872.9 Da    PI: 8.5752
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1984020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.5e-18124178256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ ++tkeq   Lee F+++++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  Lj2g3v1984020.1 124 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRARQVEVWFQNRRARTK 178
                      788899***********************************************98 PP
2HD-ZIP_I/II122.12.7e-39124213191
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                      +kk+rl+keq++lLEesF+++++L+p++K++lar+L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l
  Lj2g3v1984020.1 124 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRARQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELK-AL 213
                      69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-17111174IPR009057Homeodomain-like
SuperFamilySSF466893.55E-18115181IPR009057Homeodomain-like
PROSITE profilePS5007117.491120180IPR001356Homeobox domain
SMARTSM003895.9E-15122184IPR001356Homeobox domain
PfamPF000465.3E-16124178IPR001356Homeobox domain
CDDcd000864.60E-16124181No hitNo description
PROSITE patternPS000270155178IPR017970Homeobox, conserved site
PfamPF021838.3E-10180214IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.1E-24180223IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MGLDHDASNP GLHLALGLSL TTTNTSKETT TTTTTSSPKP TVMKPYSSKE PSLTLGLSGN  60
NKVYCEDPLE LSRQTSPHSD VVSSFSTARV VKRERVDLSC EEIEAEERLS SRVSDEDDDG  120
TNARKKLRLT KEQSALLEES FKQHSTLNPK QKQALARQLN LRARQVEVWF QNRRARTKLK  180
QTEVDCEFLK KCCETLTDEN RRLKKELQEL KALKLAQPLY MPMSAATLTM CPSCERLGDG  240
GSNIKSPFTI TPKPHFFNPF THPSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172180RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.60550.0floral bud| flower| pod| root
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1984020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1431180.0BT143118.1 Lotus japonicus clone JCVI-FLLj-17D12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001346165.11e-149transcription factor ABIG1-like protein
RefseqXP_028191847.11e-149homeobox-leucine zipper protein HAT22-like
SwissprotP466043e-89HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLI3SRM01e-175I3SRM0_LOTJA; Uncharacterized protein
STRINGGLYMA11G04840.11e-148(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114433107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22800.15e-76HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]