PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj2g3v1863470.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

HB-other

Protein Properties

Length: 172aa MW: 19942.3 Da PI: 6.9353

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj2g3v1863470.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	51.1	2.3e-16	39	94	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + k++++t++ql eLe+l ++ yp+ +++ +L+k++gL+++ V++WFqNrR++ k Lj2g3v1863470.1 39 KNKKQRYTPQQLWELEALSMETLYPNDKQKLDLSKRIGLEKNHVTYWFQNRRTQLK 94 578999**********************************************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.3E-15	22	94	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.59E-15	27	95	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.03	36	96	IPR001356	Homeobox domain
SMART	SM00389	9.1E-10	38	100	IPR001356	Homeobox domain
CDD	cd00086	2.20E-10	39	94	No hit	No description
Pfam	PF00046	5.2E-14	39	94	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MGDHSETRND EHQSGLESDN FEGASGGNQD AGGDQLQQKN KKQRYTPQQL WELEALSMET 60 LYPNDKQKLD LSKRIGLEKN HVTYWFQNRR TQLKMQRERY GNTLFRQENE KLQAENYMLK 120 ETMENARCNH CGGRLTVCGQ ASLEMKKLII ENALLQDELS RLYALASAKM QP

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269\|PubMed:10402424}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj2g3v1863470.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015877999.1	5e-49	homeobox-leucine zipper protein ANTHOCYANINLESS 2-like
Swissprot	Q0WV12	7e-42	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A1S2XYQ4	2e-45	A0A1S2XYQ4_CICAR; homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
STRING	XP_004496593.1	3e-46	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.2	9e-45	HD-ZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]