PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj2g3v1834030.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

LBD

Protein Properties

Length: 395aa MW: 43833.5 Da PI: 7.4219

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj2g3v1834030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.5	2.3e-43	98	197	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrrkC+++Cv+apyfp ++p++fa+vhk+FGasnv kll++l+ +r+da++sl+yeAear+rdPvyG+vg+i+ lq++l+q ++el Lj2g3v1834030.1 98 PCAACKFLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELNAAQRDDAVKSLAYEAEARLRDPVYGCVGLISVLQHKLRQIQVEL 191 7******************************************************************************************* PP DUF260 95 allkee 100 +++k+e Lj2g3v1834030.1 192 NTAKKE 197 9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	7	1	17	No hit	No description
PROSITE profile	PS50891	26.729	97	198	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.2E-43	98	195	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009954	Biological Process	proximal/distal pattern formation
GO:0009965	Biological Process	leaf morphogenesis
GO:0048441	Biological Process	petal development

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MKKGRALAVS VCVACACGLW HCYSINLKTP NQTLSPLYKS FPLLLLFHFL SFLNTVKFLI 60 LLPSTLHLTE EEEEEERRVT EGGRSEKMSS SSSSSNSPCA ACKFLRRKCT QECVFAPYFP 120 PDNPQRFAYV HKVFGASNVA KLLNELNAAQ RDDAVKSLAY EAEARLRDPV YGCVGLISVL 180 QHKLRQIQVE LNTAKKELAT YIGPQALQGL PAPILQQQHT SHPFSSSLYP YSGNITAATA 240 QMVIRDPQPP PPQQHQILEA QQLAAAVAAR EQQEMFRSYE QQHQQQEFLR FSGGFDVGSG 300 GSPGGFSQVS PTPAVDQLSP SLALGSFDNT FTLQQQPQQG EPHSHPHHLS LQAQLLLPPQ 360 QKQVQPQTQQ SQLTHHHHHQ QQPESEECRS VGPSC

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MKKGRALAVS VCVACACGLW HCYSINLKTP NQTLSPLYKS FPLLLLFHFL SFLNTVKFLI  60
LLPSTLHLTE EEEEEERRVT EGGRSEKMSS SSSSSNSPCA ACKFLRRKCT QECVFAPYFP  120
PDNPQRFAYV HKVFGASNVA KLLNELNAAQ RDDAVKSLAY EAEARLRDPV YGCVGLISVL  180
QHKLRQIQVE LNTAKKELAT YIGPQALQGL PAPILQQQHT SHPFSSSLYP YSGNITAATA  240
QMVIRDPQPP PPQQHQILEA QQLAAAVAAR EQQEMFRSYE QQHQQQEFLR FSGGFDVGSG  300
GSPGGFSQVS PTPAVDQLSP SLALGSFDNT FTLQQQPQQG EPHSHPHHLS LQAQLLLPPQ  360
QKQVQPQTQQ SQLTHHHHHQ QQPESEECRS VGPSC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-47	89	211	2	123	LOB family transfactor Ramosa2.1
5ly0_B	3e-47	89	211	2	123	LOB family transfactor Ramosa2.1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.13714	0.0	cell culture

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in trichomes, at the base of many lateral organs, including branching points of the inflorescence and floral organs and in the distal part of the pistil at stages when style and stigma start to develop. Also detected in pedicels and at the base of petals and sepals. {ECO:0000269\|PubMed:15821980}.

Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj2g3v1834030.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027912949.1	1e-152	LOB domain-containing protein 36-like
Refseq	XP_027912950.1	1e-152	LOB domain-containing protein 36-like
Refseq	XP_027912951.1	1e-152	LOB domain-containing protein 36-like
Swissprot	Q9FKZ3	1e-69	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A4D6LTL8	1e-151	A0A4D6LTL8_VIGUN; Lateral organ boundary
STRING	XP_007156831.1	1e-142	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2353	34	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	8e-64	ASYMMETRIC LEAVES 2-like 1

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]