PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1695340.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WOX
Protein Properties Length: 281aa    MW: 31652.7 Da    PI: 6.4062
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1695340.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.94.8e-203091257
                     T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     ++R+t+t++q+++L+el+++   r psae++++++++l    +++ ++V++WFqN++a+e++
  Lj2g3v1695340.1 30 STRWTPTTDQIRILKELYYNngIRSPSAEQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 91
                     58*****************8567*************************************97 PP
2Wus_type_Homeobox113.88.6e-372993265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++tRWtPt++Qi+iL+ely+ +G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
    Lj2g3v1695340.1 29 SSTRWTPTTDQIRILKELYYnNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKK 93
                       789***************9779*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-8891IPR009057Homeodomain-like
SuperFamilySSF466895.99E-122499IPR009057Homeodomain-like
PROSITE profilePS5007111.0132692IPR001356Homeobox domain
SMARTSM003891.9E-52896IPR001356Homeobox domain
CDDcd000866.46E-73193No hitNo description
PfamPF000461.7E-173191IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MEQPPQQQQQ NEDGGGSSGG KGGFLSRQSS TRWTPTTDQI RILKELYYNN GIRSPSAEQI  60
QRISARLRQY GKIEGKNVFY WFQNHKARER QKKRFTSETH LLPNPIQQQQ RNGTNAAWKQ  120
PEEQPIINHT KYSSNNISAP AEIVSVGQIG NFGYGSLPME KSFRDCSISA GGNTGYAGSA  180
INHNLGWMGV DPYSSAYTNF FDKIRPTEEE TMEEEGQENG SPEIETLPLF PMHGEDIHSG  240
YFNLKSNSSH YAGGWYQTEE GYFNNGSRAS LELSLKYPDF A
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In the active shoot meristem, it is specifically expressed in a small cell group underneath the presume position of stem cells. {ECO:0000269|PubMed:12208843}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269|PubMed:12208843}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1695340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8730905e-94EU873090.1 Glycine max wuschel gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517180.21e-126protein WUSCHEL
RefseqXP_028211599.11e-126protein WUSCHEL-like
SwissprotQ8LL111e-80WUS_PETHY; Protein WUSCHEL
TrEMBLA0A445M4471e-125A0A445M447_GLYSO; Protein WUSCHEL
TrEMBLK7K4871e-125K7K487_SOYBN; Uncharacterized protein
STRINGGLYMA01G37190.21e-126(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82413345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.11e-47WOX family protein
Publications ? help Back to Top
  1. Stuurman J,Jäggi F,Kuhlemeier C
    Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells.
    Genes Dev., 2002. 16(17): p. 2213-8
    [PMID:12208843]