PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1510620.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bZIP
Protein Properties Length: 384aa    MW: 41048.2 Da    PI: 6.9747
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1510620.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_168.21.4e-21302364163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L++eN +L++e+++++  +++l +e+
  Lj2g3v1510620.1 302 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEALKEENASLRSEVSRIRSDYEQLLTEN 364
                      89*********************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077773.0E-29197IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165963.1E-53136269No hitNo description
Gene3DG3DSA:1.20.5.1703.0E-17295361No hitNo description
SMARTSM003387.4E-22302366IPR004827Basic-leucine zipper domain
PfamPF001702.4E-20302364IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.128304367IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.44E-10305361No hitNo description
CDDcd147026.50E-24307357No hitNo description
PROSITE patternPS000360309324IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MGSSEMDKTP KEKESKTPPL TPQEQPPTTS TGTVNPPDWS SFQAYSPMPP HGFLASNPQA  60
HPYMWGVQHI MPPYGTPPHP YVAMYPHGGI YAHPSIPPGS YPFSPFAMPS PNGIVEASGN  120
TPGSMEADGK PPEVKEKLPI KRSKGSLGSL NMITRKNNEH GKTPGTSANG AHSKSGESGS  180
EGTSEGSDAN SQNDSELKSG GRRDSFEDEP SQNGTAVHTT QNGGLNTPHQ TMSMVPISAG  240
GAPGAVPGPA TNLNIGMDYW GTPTSSNIPA LHGNVPSTAV AGGMATGGSR DGVQSQHWLQ  300
DERELKRQRR KQSNRESARR SRLRKQAECD ELAQRAEALK EENASLRSEV SRIRSDYEQL  360
LTENAALKER LGELPGNDDL RSGK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1318324RRSRLRK
2318325RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.20380.0cell culture| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1510620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027359655.10.0bZIP transcription factor 16 isoform X1
SwissprotQ501B21e-159BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A445J4090.0A0A445J409_GLYSO; BZIP transcription factor 16
TrEMBLI1L5160.0I1L516_SOYBN; Uncharacterized protein
STRINGGLYMA09G34170.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40173256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-143basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]