PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1509550.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family HD-ZIP
Protein Properties Length: 776aa    MW: 86687.5 Da    PI: 5.6885
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1509550.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.7e-2074129156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ +++t+ q++e+e+lF+++++p+ ++r +L++ lgL+ rqVk+WFqNrR+++k
  Lj2g3v1509550.1  74 KKRYHRHTARQIQEMEALFKECPHPDDKQRMKLSHDLGLKPRQVKFWFQNRRTQMK 129
                      688899***********************************************998 PP
2START144.69.7e-462755002206
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv............dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 
                      la + ++elvk+   +ep+W +ss  + + evl  +e ++              ++ea r++ vv+m++++lv  +ld   +W e ++    +a
  Lj2g3v1509550.1 275 LAASSMAELVKMCRTNEPLWIRSS-TDSEREVLNFEEHARMfpcplslkhqseMRTEATRDTSVVIMNSVTLVDAFLDAQ-KWMELFPsivsSA 366
                      78899*******************.44444555555444448999999999999**************************.*******9**9** PP

                      EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEE CS
            START  80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvt 165
                      +t++ iss       g+lqlm+aelq+lsplv+ R+  f+Ry++q  ++g+w+ivd  +ds q++  + s+ R  +++Sg++i++++ng+s+vt
  Lj2g3v1509550.1 367 KTVQIISSSasghanGTLQLMYAELQMLSPLVStRETHFLRYCQQnAEEGTWAIVDFPIDSFQQNF-HTSYPRYCRRCSGCVIQDMPNGYSRVT 459
                      ********99******************************************************99.9************************** PP

                      EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      wveh+ ++++ +h+++   v sg+a+ga++w+  lqrqce+
  Lj2g3v1509550.1 460 WVEHAKVEEKPIHQIFCNYVYSGMAFGAQRWLGVLQRQCER 500
                      ***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.6E-1968132IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-2170136IPR009057Homeodomain-like
PROSITE profilePS5007116.87671131IPR001356Homeobox domain
SMARTSM003896.2E-1972135IPR001356Homeobox domain
CDDcd000869.55E-1874132No hitNo description
PfamPF000465.4E-1874129IPR001356Homeobox domain
PROSITE patternPS000270106129IPR017970Homeobox, conserved site
PROSITE profilePS5084842.907265503IPR002913START domain
SuperFamilySSF559611.92E-31267502No hitNo description
CDDcd088752.14E-109269499No hitNo description
SMARTSM002342.2E-27274500IPR002913START domain
PfamPF018525.0E-38275500IPR002913START domain
SuperFamilySSF559612.33E-19518753No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 776 aa     Download sequence    Send to blast
MYGDCQVMSD TLFSSPIQNP NFNFISTMPF HPFPPMKEED SMLGGKEEME SGSESEQVED  60
KSGNEQEITE QPKKKRYHRH TARQIQEMEA LFKECPHPDD KQRMKLSHDL GLKPRQVKFW  120
FQNRRTQMKA QQDRSDNVIL RAENDSLKNE NYRLQAALRS IICPNCGGPC MMGAEMGLDE  180
QQLRLENARL REELERVCCI TSRYTGRHIQ TMAGSSALMA PSLDLDMNIY SRHFGETLPP  240
CTEMIPVPML PPEASPFHQE DGLLMEDEKP LAMELAASSM AELVKMCRTN EPLWIRSSTD  300
SEREVLNFEE HARMFPCPLS LKHQSEMRTE ATRDTSVVIM NSVTLVDAFL DAQKWMELFP  360
SIVSSAKTVQ IISSSASGHA NGTLQLMYAE LQMLSPLVST RETHFLRYCQ QNAEEGTWAI  420
VDFPIDSFQQ NFHTSYPRYC RRCSGCVIQD MPNGYSRVTW VEHAKVEEKP IHQIFCNYVY  480
SGMAFGAQRW LGVLQRQCER VASLMARNIS DLGVIPSPEA RKNLMKLAQR MIKTFSHNMS  540
TSGGQSWTAI SDSPEDTVRI TTRKVTEPGQ PNGVILSAVS TTWLPYSHTK VFDLLRDERH  600
RSQMDALSNG NSLNEVAHIA NGSHPGNCIS LLRINVASNS SQNVELMLQE SCTDQSGSLV  660
VYTTIDVESI QLAMSGEDPS CIALLPQGFM IVPMVPSNST DANSPEAGAG NTSGCLLTMG  720
LQVLASTIPT AKLNLSSVTA INNHLCNTLH QIEASLCSAN GFLVAEPTTS APITKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.38900.0floral bud| pod
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1509550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150439e-58AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020217931.10.0homeobox-leucine zipper protein ROC3
RefseqXP_020217932.10.0homeobox-leucine zipper protein ROC3
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLA0A151THF90.0A0A151THF9_CAJCA; Homeobox-leucine zipper protein ROC3
STRINGXP_007158253.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109463036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7