PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj2g3v1349130.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

HD-ZIP

Protein Properties

Length: 320aa MW: 36246.8 Da PI: 4.3779

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj2g3v1349130.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.5	2.6e-19	86	139	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq++ Le+ Fe ++++ e++ +LAk+lgL+ rqV +WFqNrRa++k Lj2g3v1349130.1 86 KKRRLSSEQVQFLERSFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARYK 139 56689************************************************9 PP
2	HD-ZIP_I/II	131.9	2.4e-42	86	177	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkrrls+eqv++LE+sFe e+kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlEkdy +Lk+++d+lk + ++L +e+++L+ee+++ Lj2g3v1349130.1 86 KKRRLSSEQVQFLERSFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARYKTKQLEKDYGTLKASFDRLKGDYDNLAQENDKLKEEVNS 177 9***************************************************************************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.17E-19	75	143	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.491	81	141	IPR001356	Homeobox domain
SMART	SM00389	8.9E-19	83	145	IPR001356	Homeobox domain
CDD	cd00086	1.40E-18	84	142	No hit	No description
Pfam	PF00046	1.1E-16	86	139	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	7.9E-20	88	148	IPR009057	Homeodomain-like
PRINTS	PR00031	4.9E-6	112	121	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	116	139	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.9E-6	121	137	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.9E-17	141	182	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MAGSKLYGGS NMALLLQNER LPCSSEVLDS LWGHTSNPAS FQGSKSVVDF ENVGGSRVTD 60 RSFFQQLDKE ENCDDDYDAC FHQPGKKRRL SSEQVQFLER SFEVENKLEP ERKVQLAKEL 120 GLQPRQVAIW FQNRRARYKT KQLEKDYGTL KASFDRLKGD YDNLAQENDK LKEEVNSLKN 180 KLIPRDKEKE NSDDKSSPDA AEPMDLISNA NSENGSKVPL PNMVTCCKQE DANSAKSDVL 240 DSDSPHCTDG NHFMEPADSS HAFEPDHSDF SQDEEDNLGE NLLNLPCLPK VEDVCYDDLP 300 DNSCNFGFPV EDQTFCFWPY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	141	RRARYKTKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.5965	0.0	cell culture\| flower\| pod\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Widely expressed. {ECO:0000269\|PubMed:16055682}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:8535134}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj2g3v1349130.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT134514	0.0	BT134514.1 Lotus japonicus clone JCVI-FLLj-16B6 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027361309.1	0.0	homeobox-leucine zipper protein HAT5
Swissprot	Q02283	2e-42	HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBL	A0A0L9VNR3	0.0	A0A0L9VNR3_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3T340	0.0	A0A0S3T340_PHAAN; Uncharacterized protein
STRING	XP_007157405.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1500	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	7e-45	homeobox 1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Arce AL,Chan RL A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype. Plant Physiol., 2017. 175(3): p. 1238-1253 [PMID:28956754]