PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj2g3v1293180.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

TCP

Protein Properties

Length: 430aa MW: 45176.7 Da PI: 6.6598

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj2g3v1293180.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123	3.4e-38	69	198	2	111
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88 ++k+ +++ +h kv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s++ Lj2g3v1293180.1 69 PPKRPPTKARHPKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSAPshyfrg 162 789******************************************************************9997666777776644444555666 PP TCP 89 .............kaaksaakskksqksaasalnla 111 ++ +s a+ ++ + + s +n++ Lj2g3v1293180.1 163 nyfspttfstaaaSQLRSRAEWDRNMNMSMSSNNMN 198 666665554444422222223333333333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	25.213	75	129	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.1E-37	75	234	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MELEAADHHH HHHQNGIRTR PNFPLQLLEK TDLDLEDVSE QQQQQPCSTT AHDGGGDIVA 60 TADQAKKQPP KRPPTKARHP KVDGRGRRIR MPAACAARVF QLTRELGHKS DGETIEWLLQ 120 QAEPAVIAAT GTGTIPANFT SLNISLRSSG SSMSAPSHYF RGNYFSPTTF STAAASQLRS 180 RAEWDRNMNM SMSSNNMNED SRRVTMLENP SSSLSSIMNF NSVSNVNAML QAKHELREEE 240 AAASGSGGGF ELVTADSDGS LGRKRRPEQE LSQMGSYLLQ SNVGSLPASH ASNTAAFWMV 300 AGNGGNQGVS GGGGASNGDP IWAIPSVGNS GVYRGAVPAA AGGIHFMNFA SPMMPFMPGS 360 QLGSSLMGNG GGGSGGSAFM GESNLGMLSA LNGYRQNPAN GLPESPTSAG QHHGGGGGDD 420 GHDDSTSQHP

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MELEAADHHH HHHQNGIRTR PNFPLQLLEK TDLDLEDVSE QQQQQPCSTT AHDGGGDIVA  60
TADQAKKQPP KRPPTKARHP KVDGRGRRIR MPAACAARVF QLTRELGHKS DGETIEWLLQ  120
QAEPAVIAAT GTGTIPANFT SLNISLRSSG SSMSAPSHYF RGNYFSPTTF STAAASQLRS  180
RAEWDRNMNM SMSSNNMNED SRRVTMLENP SSSLSSIMNF NSVSNVNAML QAKHELREEE  240
AAASGSGGGF ELVTADSDGS LGRKRRPEQE LSQMGSYLLQ SNVGSLPASH ASNTAAFWMV  300
AGNGGNQGVS GGGGASNGDP IWAIPSVGNS GVYRGAVPAA AGGIHFMNFA SPMMPFMPGS  360
QLGSSLMGNG GGGSGGSAFM GESNLGMLSA LNGYRQNPAN GLPESPTSAG QHHGGGGGDD  420
GHDDSTSQHP

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.9858	0.0	pod\| protoplast\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj2g3v1293180.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007157639.1	0.0	hypothetical protein PHAVU_002G086600g
TrEMBL	V7CJV7	0.0	V7CJV7_PHAVU; Uncharacterized protein
STRING	XP_007157639.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2120	32	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	9e-43	TCP family protein