PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj2g3v1278950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 213aa MW: 24543.3 Da PI: 5.4871 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.3 | 3.6e-10 | 47 | 90 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 e Er+RR+++ +++ Lr+l+P + ++Ka+i A+ YIk+Lq Lj2g3v1278950.1 47 EYERKRREKLSTRLLMLRSLVPIV-----TNMNKATIIDDAITYIKELQ 90 77*********************8.....79*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.28E-16 | 40 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.227 | 40 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.4E-14 | 42 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-7 | 45 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.0E-12 | 46 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.33E-10 | 49 | 94 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MGHVYDDRLT ISLEELGFNA ENGSNRGRMG RRSYDDDAKT FKSKNLEYER KRREKLSTRL 60 LMLRSLVPIV TNMNKATIID DAITYIKELQ DQVETLTREL LQETEATSKE VAKPKINDFD 120 LAEEMKKWGI QEEVHVTKID GNKLWVKMII ENKRGSFKKL VEFLDTYGIA LIDTNLTAMK 180 GALLITTCIQ GMDGQTLEVE QINQWLLDIL RAI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 48 | 53 | ERKRRE |
2 | 49 | 54 | RKRREK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00091 | SELEX | Transfer from AT4G21330 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj2g3v1278950.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP010558 | 2e-49 | AP010558.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT03A02, TM1616, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027348379.1 | 3e-92 | transcription factor DYT1-like | ||||
TrEMBL | V7BTB2 | 3e-81 | V7BTB2_PHAVU; Uncharacterized protein | ||||
STRING | XP_007148286.1 | 5e-82 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5510 | 29 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21330.1 | 2e-43 | bHLH family protein |