PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj2g3v1277610.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | NAC | ||||||||
Protein Properties | Length: 283aa MW: 32142.2 Da PI: 7.233 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 175.1 | 1.9e-54 | 9 | 134 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+v+yL+++v+++++++ +i+evdiyk++Pw+Lp k++ +ekewyfFs+r++ky++g r+nra+ sgyWkatg+dk+++s Lj2g3v1277610.1 9 LPPGFRFHPTDEELIVHYLCNQVSSHPCPA-PIIPEVDIYKFDPWELPDKTAFGEKEWYFFSPRERKYPNGARPNRAAVSGYWKATGTDKSIFS 101 79***************************9.88***************888889**************************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kk Lvfykg+ pkg+ktdW+mheyrl Lj2g3v1277610.1 102 -GSQHVGVKKALVFYKGKPPKGVKTDWIMHEYRL 134 .99*****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.05E-66 | 6 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.025 | 9 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-26 | 10 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009825 | Biological Process | multidimensional cell growth | ||||
GO:0009835 | Biological Process | fruit ripening | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MEGSSSSELP PGFRFHPTDE ELIVHYLCNQ VSSHPCPAPI IPEVDIYKFD PWELPDKTAF 60 GEKEWYFFSP RERKYPNGAR PNRAAVSGYW KATGTDKSIF SGSQHVGVKK ALVFYKGKPP 120 KGVKTDWIMH EYRLIGTTTQ PPRQIGSMRL DDWVLCRIYK KKATANSLEV KEEEYPTTPI 180 DLKRANEECE QKIDLKFPRT NSLANLLDVD YLGSISHILS DGSYNSTFDF QLNSAHGGTD 240 PLQLMEMPTN SSYAADSGKL QVKRNNTINP TIFVKQDYDH RGQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 3e-77 | 9 | 166 | 20 | 173 | NAC domain-containing protein 19 |
3swm_B | 3e-77 | 9 | 166 | 20 | 173 | NAC domain-containing protein 19 |
3swm_C | 3e-77 | 9 | 166 | 20 | 173 | NAC domain-containing protein 19 |
3swm_D | 3e-77 | 9 | 166 | 20 | 173 | NAC domain-containing protein 19 |
3swp_A | 3e-77 | 9 | 166 | 20 | 173 | NAC domain-containing protein 19 |
3swp_B | 3e-77 | 9 | 166 | 20 | 173 | NAC domain-containing protein 19 |
3swp_C | 3e-77 | 9 | 166 | 20 | 173 | NAC domain-containing protein 19 |
3swp_D | 3e-77 | 9 | 166 | 20 | 173 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.17464 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stem, flowers, and leaves. {ECO:0000269|PubMed:29760199}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00221 | DAP | Transfer from AT1G69490 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj2g3v1277610.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT138476 | 0.0 | BT138476.1 Lotus japonicus clone JCVI-FLLj-13K17 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020236734.1 | 1e-157 | NAC domain-containing protein 2 isoform X2 | ||||
Swissprot | K4BNG7 | 1e-108 | NAP2_SOLLC; NAC domain-containing protein 2 | ||||
TrEMBL | I3SDC9 | 0.0 | I3SDC9_LOTJA; Uncharacterized protein | ||||
STRING | GLYMA01G06150.1 | 1e-155 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4103 | 32 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 1e-107 | NAC-like, activated by AP3/PI |
Publications ? help Back to Top | |||
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