PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1254030.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 518aa    MW: 56462.6 Da    PI: 9.2424
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1254030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00038455477123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp+C+k F++   L  H r+H
  Lj2g3v1254030.1 455 HECPICNKIFRSGQALGGHKRSH 477
                      79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.59E-6231No hitNo description
Gene3DG3DSA:3.30.160.601.5E-4328IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.14628IPR015880Zinc finger, C2H2-like
PfamPF139121.7E-6629IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.097633IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
PROSITE profilePS501579.349115142IPR007087Zinc finger, C2H2
SMARTSM003550.21115137IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.18E-8116137No hitNo description
PROSITE patternPS000280117137IPR007087Zinc finger, C2H2
PfamPF139125.5E-7117139IPR007087Zinc finger, C2H2
SuperFamilySSF576675.18E-8450477No hitNo description
PROSITE profilePS501579.702455477IPR007087Zinc finger, C2H2
SMARTSM003550.018455477IPR015880Zinc finger, C2H2-like
PfamPF139125.0E-11455477IPR007087Zinc finger, C2H2
PROSITE patternPS000280457477IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MEERKFVCKY CSKRFPCGKS LGGHIRTHMM SEHSAQANEA SAERRSNAAM LKLDAAERKR  60
KRESGYGGGG GGGGDDGGGG GGGGAGGNLM YGLRENPKKT TRFVHSNATS SQMEKFCKEC  120
GKGFPSLKAL CGHMACHSEK DRGTNLSEKQ KLVMDTQSDT ETSGPTHPRR SKRMRFNFNN  180
NNNNNNNLTN HHPSSSLANG SSSVSEVEQE QEEVARCLMM LSKDSSYKGR FALVTDSSDN  240
NSVVLEAKSP SVTFNFGKNF VSNAYELVEQ KKKVHKDTKL KSSAEIGYDS DNSDSGYFRY  300
GPKKVDSDEE SSDGFFRNEV KSSKVGYLSG FDGYDVESRK MMMLSRGSKK LVLEDLDNEH  360
SKFGSRKRLT YDSVGQKTEA LDHGGGKGWK KNHGLFTNER DNNGSGSEDS AYESDENSTD  420
SDSYPATKPH KNLNVKKCNS SKGKKKLKSK KSKEHECPIC NKIFRSGQAL GGHKRSHFVG  480
GSEENTLVIR PGAAAAPAPA AVAVPCLIDL NLPAPVDE
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1254030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150433e-50AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007157592.10.0hypothetical protein PHAVU_002G082200g
RefseqXP_027362777.10.0uncharacterized protein LOC113870380
TrEMBLV7CL060.0V7CL06_PHAVU; Uncharacterized protein
STRINGXP_007157592.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.14e-82C2H2-like zinc finger protein