PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1014380.1
Common NameHDZ-M48
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family HD-ZIP
Protein Properties Length: 167aa    MW: 19798.1 Da    PI: 5.5217
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1014380.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.76.1e-2165118356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k++++t+eq++ Le+ Fe+++++  e++++LAkklgL+ rqV vWFqNrRa++k
  Lj2g3v1014380.1  65 KKRRLTSEQVNLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWK 118
                      56789************************************************9 PP
2HD-ZIP_I/II136.59.1e-4464155192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      ekkrrl++eqv+lLE+sFeee+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy++Lk++yd+l +  +++ ke+e+L++e+ 
  Lj2g3v1014380.1  64 EKKRRLTSEQVNLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKSSYDSLLATYDTIAKENEKLKSEVV 155
                      69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.07E-2052122IPR009057Homeodomain-like
PROSITE profilePS5007118.62560120IPR001356Homeobox domain
SMARTSM003891.5E-1963124IPR001356Homeobox domain
CDDcd000861.06E-1565121No hitNo description
PfamPF000463.2E-1865118IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-2266127IPR009057Homeodomain-like
PRINTSPR000311.9E-691100IPR000047Helix-turn-helix motif
PROSITE patternPS00027095118IPR017970Homeobox, conserved site
PRINTSPR000311.9E-6100116IPR000047Helix-turn-helix motif
PfamPF021833.8E-18120162IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MESGRLYFDN NRGNNMNTFF LGNADLGFRG RSMMSMEEGS KRRPFFSSPD ELYDEEYYEE  60
QSPEKKRRLT SEQVNLLEKS FEEENKLEPE RKTQLAKKLG LQPRQVAVWF QNRRARWKTK  120
QLERDYDVLK SSYDSLLATY DTIAKENEKL KSEVVSLNEK LQVQATE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112120RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.88020.0floral bud| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1014380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3786270.0AB378627.1 Lotus japonicus HDZ-M48 mRNA for transcription factor Homeobox, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013450824.28e-98LOW QUALITY PROTEIN: homeobox-leucine zipper protein HAT5
SwissprotQ022836e-73HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLB3IX271e-116B3IX27_LOTJA; Transcription factor Homeobox
STRINGGLYMA19G01300.13e-96(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112833039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.18e-75homeobox 1
Publications ? help Back to Top
  1. Asamizu E,Shimoda Y,Kouchi H,Tabata S,Sato S
    A positive regulatory role for LjERF1 in the nodulation process is revealed by systematic analysis of nodule-associated transcription factors of Lotus japonicus.
    Plant Physiol., 2008. 147(4): p. 2030-40
    [PMID:18567832]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]