PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj2g3v0346230.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

C2H2

Protein Properties

Length: 502aa MW: 55707.9 Da PI: 4.8731

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj2g3v0346230.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.4	5.3e-05	78	100	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 kC++C++ F ++ n++rH+r H Lj2g3v0346230.1 78 KCEKCSREFCSPINYRRHLRIdH 100 7*******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.411	77	105	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	79	100	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence Send to blast
MPVAQPTAAS GTLDVMKTED GKDSVDTLVK QANGLEPVLY YPRIGESSVQ WLQFLQALEQ 60 PEPIWPLLSV VTKVQLRKCE KCSREFCSPI NYRRHLRIDH RLKKLDKDSI NNRDLLGEYW 120 DKLSVEEAME VVSFEDMLLE EVPGSSILKG VANLRRQAFS SLPQNYMRAG FSLLDMVQSN 180 PSSFPISSQE LFSILDDASE ETFLCGTAVS VQRFMFDGEA GKIVLEPRNL IACTSFLLEQ 240 KLVKACLAYK EAEALRLQQL LVDEEEAAQK RQAEILERKR KKKLRQKEQK ARERLEDDMK 300 IDGNISSTGE DMSPAEASLA AFDFEAHNPD IPADHDSSTH VTYQCPDTTE GVDGETQPGN 360 DYDPDQIIEQ QTSQGHNRLL PMTARQQELP KSQAPVANGL CASQNSQMSK LGAIQKYGTN 420 CDQNAAPIVN GGEVVSLKPE PKTTGVVSEA RLHKEPYVRK NHEVLIGSVS VTLANCSQSE 480 GSLVPSRGVC PAENLAKQNT AQ

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence Send to blast

MPVAQPTAAS GTLDVMKTED GKDSVDTLVK QANGLEPVLY YPRIGESSVQ WLQFLQALEQ  60
PEPIWPLLSV VTKVQLRKCE KCSREFCSPI NYRRHLRIDH RLKKLDKDSI NNRDLLGEYW  120
DKLSVEEAME VVSFEDMLLE EVPGSSILKG VANLRRQAFS SLPQNYMRAG FSLLDMVQSN  180
PSSFPISSQE LFSILDDASE ETFLCGTAVS VQRFMFDGEA GKIVLEPRNL IACTSFLLEQ  240
KLVKACLAYK EAEALRLQQL LVDEEEAAQK RQAEILERKR KKKLRQKEQK ARERLEDDMK  300
IDGNISSTGE DMSPAEASLA AFDFEAHNPD IPADHDSSTH VTYQCPDTTE GVDGETQPGN  360
DYDPDQIIEQ QTSQGHNRLL PMTARQQELP KSQAPVANGL CASQNSQMSK LGAIQKYGTN  420
CDQNAAPIVN GGEVVSLKPE PKTTGVVSEA RLHKEPYVRK NHEVLIGSVS VTLANCSQSE  480
GSLVPSRGVC PAENLAKQNT AQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	276	283	ERKRKKKL
2	277	281	RKRKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj2g3v0346230.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC146755	1e-58	AC146755.23 Medicago truncatula clone mth2-15i15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014618835.1	0.0	uncharacterized protein LOC100799153
Refseq	XP_028185431.1	0.0	uncharacterized protein LOC114372182
TrEMBL	A0A0B2QNN8	0.0	A0A0B2QNN8_GLYSO; Uncharacterized protein
TrEMBL	I1LDP3	0.0	I1LDP3_SOYBN; Uncharacterized protein
STRING	GLYMA10G37780.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4517	27	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-102	C2H2-like zinc finger protein