PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v4863050.1
Common NameLjMYB12
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 326aa    MW: 37392.5 Da    PI: 5.0079
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v4863050.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rgrWT+eEdell ++++  G g+W++ ++  g+ R++k+c++rw +yl
  Lj1g3v4863050.1 14 RGRWTAEEDELLTKYIQASGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                     8*******************************99************97 PP
2Myb_DNA-binding54.92e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ + eE+ l+v++++ +G++ W++Ia++m+ gRt++++k++w+++l
  Lj1g3v4863050.1  67 RGNISDEEESLIVKLHASFGNR-WSLIASHMP-GRTDNEIKNYWNSHL 112
                      7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-21564IPR009057Homeodomain-like
PROSITE profilePS5129414.887961IPR017930Myb domain
SuperFamilySSF466898.8E-2811108IPR009057Homeodomain-like
SMARTSM007171.2E-111363IPR001005SANT/Myb domain
PfamPF002495.6E-141461IPR001005SANT/Myb domain
CDDcd001672.34E-81661No hitNo description
PROSITE profilePS5129424.91562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-2565117IPR009057Homeodomain-like
SMARTSM007174.6E-1766114IPR001005SANT/Myb domain
PfamPF002492.7E-1567112IPR001005SANT/Myb domain
CDDcd001672.52E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MGRAPCCEKV GLKRGRWTAE EDELLTKYIQ ASGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRGDLKRGNI SDEEESLIVK LHASFGNRWS LIASHMPGRT DNEIKNYWNS HLSRKLVYTF  120
RGSTTKSIVD TPPKRRRCGR TSRWAMKKNK TYSLINNDLQ NQNNELEKED PVARCDVKGS  180
DDILCQEAIN VDDDVLSFHE FMDTCLMEPS GDHDVDEERE SAVMNDGGSE GVRDTCSTVD  240
TVVTSRDSQS KSENHKLHNS CSSNSLGYSS GLDSVMEMNR EDESSVLSRE QNENLLTWLW  300
EDEDWEKDFQ IVDPEKHNDM LYWFLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-231211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v4863050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3345290.0AB334529.1 Lotus japonicus LjMYB12 mRNA for MYB-related protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004494411.11e-102transcription factor MYB11-like
TrEMBLA7BJW20.0A7BJW2_LOTJA; MYB-related protein
STRINGXP_004494411.11e-102(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.13e-74myb domain protein 12