PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v4850500.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRAS
Protein Properties Length: 303aa    MW: 34866.7 Da    PI: 7.7242
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v4850500.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS222.61.9e-681830186374
             GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                      +  P+ ++ ++t  qa++e v+ge+++H iD+di+ G+Q +aL+qaLa+R+    +   ++i ++g   +  k+++e tg+rLa+fAe+l++pf
  Lj1g3v4850500.1  18 QKIPFNQVMQFTGVQAMVEHVAGETKIHLIDLDIKCGVQCIALMQALAERQnsmVKVKFFKISAIGL--TACKTKIEDTGKRLASFAESLNLPF 109
                      668************************************************5444467899*****9..45*********************** PP

             GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                      +++ +++++++++  ++++v+++Ea+++ +++ l ++ +++ +le+    +++++++++P +++v e ea+hns+sF +rf+ea+ yysa++d+
  Lj1g3v4850500.1 110 SYKHILVTDMAEF-KDHFEVEEDEAVIIYSAYFLRTMISRPDCLEN----LMRIIRNIKPSIMIVLEVEANHNSPSFGNRFIEAMFYYSAFLDC 198
                      *****999***99.799*********************99999998....******************************************** PP

             GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWk 363
                      l + + +++e r++ E+  l+  i+n+va+eg+err r+ +   Wr+ + +  + ++++se+ + qa+l+ r+++ ++  +v+++  s++ gWk
  Lj1g3v4850500.1 199 LYTCI-EDDECRVFTEAI-LSAGIRNIVAMEGRERRVRNVKIDVWRRFFARYRMVEIEFSESSMYQADLVAREFAvGKFCTVDKNGRSMIVGWK 290
                      *9996.777788877777.********************************************************777789999999999**** PP

             GRAS 364 drpLvsvSaWr 374
                      + p+ s+SaWr
  Lj1g3v4850500.1 291 GTPMHSISAWR 301
                      **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098531.2791280IPR005202Transcription factor GRAS
PfamPF035146.5E-6618301IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MELIHKMGGT NKSLLCHQKI PFNQVMQFTG VQAMVEHVAG ETKIHLIDLD IKCGVQCIAL  60
MQALAERQNS MVKVKFFKIS AIGLTACKTK IEDTGKRLAS FAESLNLPFS YKHILVTDMA  120
EFKDHFEVEE DEAVIIYSAY FLRTMISRPD CLENLMRIIR NIKPSIMIVL EVEANHNSPS  180
FGNRFIEAMF YYSAFLDCLY TCIEDDECRV FTEAILSAGI RNIVAMEGRE RRVRNVKIDV  240
WRRFFARYRM VEIEFSESSM YQADLVAREF AVGKFCTVDK NGRSMIVGWK GTPMHSISAW  300
RFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-3021300107378Protein SCARECROW
5b3h_A2e-3021300106377Protein SCARECROW
5b3h_D2e-3021300106377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v4850500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027349430.11e-165DELLA protein RGL1-like
TrEMBLA0A151RYG01e-162A0A151RYG0_CAJCA; DELLA protein RGL1
STRINGGLYMA19G40440.21e-160(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.11e-44GRAS family protein