PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v4765230.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 347aa    MW: 39164.3 Da    PI: 8.3226
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v4765230.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.61.1e-08307329426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      e C+ +++tG C++G++C F+H+
  Lj1g3v4765230.1 307 EDCMMYLKTGSCRFGSSCMFNHS 329
                      78********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF078991.4E-2530209IPR012474Frigida-like
PfamPF006421.6E-6307329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.995308331IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5308331IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-5309330IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MRLHLTGEHE PPDHQILVEL EATSDPAKVG KVFIMDSGHI FLLEQLLRIS PHIKPCVRGE  60
AMKLARDLEG NMRTSSKNPL EVLGFLLLLS IYGLVPFFVE EEVLKLFEFA DKSSGFIQNL  120
VKKQQHIEAV RFICAFKLAD KNQPVDLLWK YMQNAKLVSE NTTSLEIQDK ARDQEVATLT  180
NVLLSISDNK LESVGLLNEI RDRILELIRR NVSSVCTGTW SILKMCNTLR KRNVDPKCGR  240
RRRMEPSESK SAAAVSNGEV PQQQQQQQLR SSEPSPLAKE GALGGELRNK LDFKGADEGE  300
SSEGCAEDCM MYLKTGSCRF GSSCMFNHSI RSRIVYVRQL PLIKKYV
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v4765230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1447230.0BT144723.1 Lotus japonicus clone JCVI-FLLj-22B21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027343311.11e-73myosin-11
TrEMBLI3SW751e-139I3SW75_LOTJA; Uncharacterized protein
STRINGAES635923e-55(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.11e-07C3H family protein