PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v4578840.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WRKY
Protein Properties Length: 457aa    MW: 50056.4 Da    PI: 8.3283
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v4578840.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1031.7e-32196251359
                      -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      DgynWrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geH h 
  Lj1g3v4578840.1 196 DGYNWRKYGQKQVKGSEFPRSYYKCTYPNCPVKKKVERSF-DGQIAEIVYKGEHSHA 251
                      9***************************************.***************7 PP
2WRKY102.23.1e-32383440259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       Dg++WrKYGqK+vkg+++prsYYrCt  +C+v+k+ver+ +dpk +++tYeg+Hnhe
  Lj1g3v4578840.1 383 GDGFRWRKYGQKVVKGNPYPRSYYRCTNIKCNVRKHVERAIDDPKSFVTTYEGKHNHE 440
                      59*******************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-29181253IPR003657WRKY domain
SuperFamilySSF1182901.96E-25193253IPR003657WRKY domain
SMARTSM007742.9E-36194252IPR003657WRKY domain
PROSITE profilePS5081122.676196253IPR003657WRKY domain
PfamPF031063.3E-25196250IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.0E-33368442IPR003657WRKY domain
SuperFamilySSF1182903.66E-28376442IPR003657WRKY domain
PROSITE profilePS5081133.809377442IPR003657WRKY domain
SMARTSM007746.4E-37382441IPR003657WRKY domain
PfamPF031062.3E-25384440IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MDIQESERVV VAKPVASRPT CSSFKSFSEL LAGAINDSPP TASSQATTVS AIRPKTVRFK  60
PAMNHCPTPG FISSQGDSYG AAFGDSADKS PKPDTNQSLI YKPMAKVVSK TTASLLSNMG  120
NCSTSQQQPL QPMEANLQHS NHEKLRTKAS SNLHQSITPY AETCQTTEPC KIVQQNLEED  180
QKALTSTANG DRPSYDGYNW RKYGQKQVKG SEFPRSYYKC TYPNCPVKKK VERSFDGQIA  240
EIVYKGEHSH AKPQLPKRNS AGGAQGSVSE SERNEDNEGR MENQNDTGIA SVHSAYHVKA  300
PQANNDSAVL IGAMNAGGGN TENSCGLSGE CEGASKGFEA EEEESRSKRR KNENQSNEAA  360
VSEEGLAEPR IVMQSSMDSE IIGDGFRWRK YGQKVVKGNP YPRSYYRCTN IKCNVRKHVE  420
RAIDDPKSFV TTYEGKHNHE MPLKNTASVA SEKNSQA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-31196442877Probable WRKY transcription factor 4
2lex_A2e-31196442877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v4578840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304597.10.0WRKY transcription factor 44-like
RefseqXP_003554351.10.0WRKY transcription factor 44-like isoform X1
RefseqXP_025982735.10.0WRKY transcription factor 44-like isoform X1
RefseqXP_028215930.10.0WRKY transcription factor 44-like
TrEMBLA0A445FI030.0A0A445FI03_GLYSO; WRKY transcription factor 44
TrEMBLI1NA430.0I1NA43_SOYBN; WRKY transcription factor
STRINGGLYMA19G36100.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67903450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.19e-95WRKY family protein