PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v3476150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 150aa MW: 17386.4 Da PI: 9.412 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 44.1 | 2.7e-14 | 11 | 49 | 3 | 41 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 i+++s r+ tf kR++gilKK +EL +L++++++ ii + Lj1g3v3476150.1 11 ISDHSSRKATFNKRKKGILKKLKELTILTGIQACAIISG 49 99**********************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 16.133 | 1 | 47 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.54E-19 | 1 | 81 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.8E-18 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.20E-21 | 2 | 74 | No hit | No description |
PRINTS | PR00404 | 9.2E-9 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.3E-13 | 11 | 47 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.2E-9 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MTRAKVELAY ISDHSSRKAT FNKRKKGILK KLKELTILTG IQACAIISGL FNSPPVVWPN 60 TGEAMHVVEK YQNAPAINES NNLNQMSFMM KIISKFQDVL KKKLRRIREY ELTMVMFNYM 120 EDKTLPEDLS FEDCNIINEL VQKKIEEIDL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 16 | 31 | RKATFNKRKKGILKKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v3476150.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13237 | 9 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 5e-18 | AGAMOUS-like 80 |