PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v3182310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB_related | ||||||||
Protein Properties | Length: 252aa MW: 29705.8 Da PI: 8.7714 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.7 | 1.5e-09 | 45 | 85 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT++E e l ++ +q+G++ Wk+Ia +g + + ++k+ w+ Lj1g3v3182310.1 45 KWTPDEFEVLRKLQNQHGSD-WKKIAGVLG--KHPVHVKDAWRR 85 8*******************.********8..7899**999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.286 | 40 | 91 | IPR017930 | Myb domain |
SMART | SM00717 | 3.4E-4 | 42 | 89 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.87E-10 | 44 | 104 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.73E-4 | 45 | 86 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.5E-11 | 45 | 96 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 1.5E-11 | 46 | 104 | No hit | No description |
PROSITE profile | PS50090 | 7.909 | 88 | 157 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.073 | 92 | 159 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-7 | 97 | 158 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.51E-5 | 137 | 215 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.783 | 159 | 212 | IPR017877 | Myb-like domain |
SMART | SM00717 | 65 | 163 | 214 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MILHCKSHPE VRDCWKEIGA VLPKRPHISV YYRAHILFER DETRKWTPDE FEVLRKLQNQ 60 HGSDWKKIAG VLGKHPVHVK DAWRRIRQTD TNKGRWTQDE YQQLFDLVNK DLRARAAEEC 120 RKSKHGMLRD NVSWEAISNK FGARNSARCC LKWYKQLTSP MVADGVWSDT DDYRLLNALY 180 TLDAYSMEEV DWDNLLEHRS GDMSRKRWNQ MVQYIGQHGT KSFAEQVEIL AKRFCPDLLE 240 AREAFDSKPV VG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v3182310.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009756 | 0.0 | AP009756.1 Lotus japonicus genomic DNA, clone: LjT38B21, TM1912, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003541381.2 | 1e-145 | RNA polymerase I termination factor | ||||
Refseq | XP_006594063.1 | 1e-145 | RNA polymerase I termination factor | ||||
Refseq | XP_006594064.1 | 1e-145 | RNA polymerase I termination factor | ||||
Refseq | XP_027366502.1 | 1e-146 | cyclin-D-binding Myb-like transcription factor 1 | ||||
Refseq | XP_028198132.1 | 1e-145 | RNA polymerase I termination factor | ||||
Refseq | XP_028198133.1 | 1e-145 | RNA polymerase I termination factor | ||||
Refseq | XP_028198134.1 | 1e-145 | RNA polymerase I termination factor | ||||
Refseq | XP_028198135.1 | 1e-145 | RNA polymerase I termination factor | ||||
TrEMBL | A0A0B2SVJ4 | 1e-144 | A0A0B2SVJ4_GLYSO; Cyclin-D-binding Myb-like transcription factor 1 | ||||
TrEMBL | I1LYQ8 | 1e-144 | I1LYQ8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G19060.1 | 1e-145 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6704 | 19 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41020.1 | 1e-98 | MYB_related family protein |