PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v2925250.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 237aa MW: 26008.8 Da PI: 6.8278 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 79.6 | 4e-25 | 52 | 103 | 8 | 60 |
ZF-HD_dimer 8 eClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 C+k hA+s GghavDGC+Efm++ g+egt +a+ CaAC+CHRnFHR+e + e Lj1g3v2925250.1 52 XCQKTHAVSFGGHAVDGCCEFMAA-GDEGTLEAVICAACNCHRNFHRKEIDGE 103 6**********************9.999********************98865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51523 | 23.535 | 50 | 99 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 6.2E-23 | 52 | 100 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 5.4E-22 | 53 | 100 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 8.0E-17 | 53 | 107 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 6.1E-20 | 159 | 235 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-30 | 162 | 236 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 6.2E-24 | 174 | 231 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MEFDEQEEQD EEMGIPESPP PVPASYDPLL NSAPRSKIAE VSAPVIGRKG GXCQKTHAVS 60 FGGHAVDGCC EFMAAGDEGT LEAVICAACN CHRNFHRKEI DGETVASCQR QQPPPPPGHH 120 HQYHSQFSPY YHRGPQHHAA LALPPATSGG GFSREEEDMS NPSSSGGGGG GGMKKRYRTK 180 FTPEQKEKML AFAEELGWRI QKHQEAAVEQ FCAETCVRRN VLKVWMHNNK NTLGKKP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-29 | 175 | 232 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.5178 | 1e-144 | floral bud |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269|PubMed:16428600}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v2925250.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004968 | 1e-163 | AP004968.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT43O24, TM0145, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003615230.1 | 1e-100 | zinc-finger homeodomain protein 2 | ||||
Swissprot | Q9SB61 | 1e-64 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | G7KBF3 | 3e-99 | G7KBF3_MEDTR; Homeobox domain, ZF-HD class protein | ||||
STRING | AES98188 | 1e-100 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 6e-61 | homeobox protein 22 |
Publications ? help Back to Top | |||
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