PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v2809220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 179aa MW: 20843.9 Da PI: 5.7962 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 43.5 | 4.1e-14 | 10 | 49 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i + s r+ t+ +R++g+lKK eEL +LC+++v+ +++s+ Lj1g3v2809220.1 10 IVDGSSRKATYVRRKKGMLKKLEELTTLCGIDVCAVVYSE 49 667789********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 14.367 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.7E-13 | 1 | 59 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 8.46E-22 | 1 | 84 | No hit | No description |
SuperFamily | SSF55455 | 1.83E-21 | 3 | 93 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-13 | 10 | 49 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MGNKVNLEYI VDGSSRKATY VRRKKGMLKK LEELTTLCGI DVCAVVYSEF HHQPLVWPSP 60 PEVQRMINNF NNYSEFGKSK NMMNQESFLE EKILKATEKL AKFEKENREM EMSMRMFELM 120 ANGNIIDNMN NVELNDMAWI IDEKLKHVNW RITELDNKAS TSQSQAQMAD EAVKPIDKE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 15 | 30 | RKATYVRRKKGMLKKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v2809220.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004500453.1 | 6e-56 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A1S2Y772 | 1e-54 | A0A1S2Y772_CICAR; agamous-like MADS-box protein AGL80 | ||||
STRING | XP_004500453.1 | 2e-55 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF452 | 33 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 1e-38 | AGAMOUS-like 80 |