PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v2035130.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NAC
Protein Properties Length: 383aa    MW: 42254.8 Da    PI: 8.6457
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v2035130.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.76.6e-55291561128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdeel+++yL +k+++++++  ++i++vd++k+ePw+Lp k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+++
  Lj1g3v2035130.1  29 LPPGFRFHPTDEELITCYLINKISDSSFTG-KAITDVDLNKCEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFN 121
                      79*************************999.88***************99999****************************************9 PP

              NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + ++elvg+kktLvfykgrap+gek++Wvmheyr+
  Lj1g3v2035130.1 122 SvTSELVGMKKTLVFYKGRAPRGEKSNWVMHEYRI 156
                      989999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-6324178IPR003441NAC domain
PROSITE profilePS5100560.32329178IPR003441NAC domain
PfamPF023658.8E-2830156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MQKEKEVIIK EGTETTEMEG SHGGKEETLP PGFRFHPTDE ELITCYLINK ISDSSFTGKA  60
ITDVDLNKCE PWELPGKAKM GEKEWYFFSL RDRKYPTGVR TNRATNTGYW KTTGKDKEIF  120
NSVTSELVGM KKTLVFYKGR APRGEKSNWV MHEYRIHSKS TFRTNKQDEW VVCRVFKKSA  180
GAKKFPTSNH TRAVLNPYSL ELAPNMMPPP MMQLASDPSA AHFLYGRNYM GNTAELAEIA  240
RVLRGGGSSS GFNLQPMVQQ SQLNCYPVPA VGGAGGGGFT ISGLNLNLGG GGGAVASQPV  300
LRPMLQPSQQ PHPAQTMAQV MLHDVSSNMM TGNPLGAEII NNGGYGGGTE MSNVTNNNHH  360
GHGNRYNMGM EHCVDLENYW PSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-57201841171NO APICAL MERISTEM PROTEIN
1ut4_B1e-57201841171NO APICAL MERISTEM PROTEIN
1ut7_A1e-57201841171NO APICAL MERISTEM PROTEIN
1ut7_B1e-57201841171NO APICAL MERISTEM PROTEIN
4dul_A1e-57201841171NAC domain-containing protein 19
4dul_B1e-57201841171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00277DAPTransfer from AT2G24430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v2035130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0097090.0AP009709.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT35C22, TM1767, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006578207.10.0protein CUP-SHAPED COTYLEDON 3 isoform X1
RefseqXP_028228167.10.0protein CUP-SHAPED COTYLEDON 3-like isoform X1
TrEMBLK7KIT30.0K7KIT3_SOYBN; Uncharacterized protein
STRINGGLYMA04G08320.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50733253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.21e-107NAC domain containing protein 38