PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v1382070.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 309aa    MW: 34467.6 Da    PI: 8.2179
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v1382070.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.43.4e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+lv+++k++G g+W++ ++  g+ R++k+c++rw +yl
  Lj1g3v1382070.1 14 KGAWTKEEDERLVNYIKLHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding59.38.7e-1967111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T+eEdel++ ++ +lG++ W++Ia++++ gRt++++k++w+++
  Lj1g3v1382070.1  67 RGNFTEEEDELIISLHSLLGNK-WSLIAARLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.6E-24564IPR009057Homeodomain-like
PROSITE profilePS5129417.855961IPR017930Myb domain
SMARTSM007174.6E-141363IPR001005SANT/Myb domain
SuperFamilySSF466897.91E-3013108IPR009057Homeodomain-like
PfamPF002497.2E-161461IPR001005SANT/Myb domain
CDDcd001678.17E-111661No hitNo description
PROSITE profilePS5129429.29862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2865116IPR009057Homeodomain-like
SMARTSM007174.1E-1866114IPR001005SANT/Myb domain
PfamPF002492.6E-1767111IPR001005SANT/Myb domain
CDDcd001671.17E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MGRSPCCEKE HTNKGAWTKE EDERLVNYIK LHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TEEEDELIIS LHSLLGNKWS LIAARLPGRT DNEIKNYWNT HIKRKLYSRG  120
IDPQTHRTIN ASSAAATATT TTVPSSANVA DPLKLTTITN KNMKNDSSTN IIISNNNDNN  180
ITNNISFQLV KIGNDTVHED SNSSSGVTIE EASPHHHQQL NLELSIGLPS HQYQNQLASS  240
SSVKLKHEQQ EEPPRINLYQ QWCGNVSQGA CVCYGLGFQT NQACCCRAMA TAAATKVTKA  300
ANEDDIFRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-29141167108B-MYB
1h8a_C8e-291311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.77440.0flower| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in flowers and weakly in roots and stems. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v1382070.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0971271e-133BT097127.1 Soybean clone JCVI-FLGm-21J21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027357977.11e-128myb-related protein 308-like
SwissprotP813952e-89MYB30_ANTMA; Myb-related protein 330
TrEMBLA0A0L9UEB01e-125A0A0L9UEB0_PHAAN; Uncharacterized protein
STRINGXP_007137818.11e-123(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.16e-86myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]