PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0359549.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | ERF | ||||||||
Protein Properties | Length: 194aa MW: 20877.4 Da PI: 8.8094 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.9 | 2.9e-19 | 65 | 115 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+WvAeIr+p + r kr +lg+f ta +Aa a+++a+++++g Lj0g3v0359549.1 65 CNYRGVRQRT-WGKWVAEIREP---N-RgKRLWLGTFATAIGAALAYDEAARAMYG 115 56*****999.**********8...3.35************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.1E-13 | 65 | 115 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.23E-32 | 65 | 125 | No hit | No description |
SMART | SM00380 | 2.5E-37 | 66 | 129 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.799 | 66 | 123 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.17E-21 | 66 | 123 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.6E-32 | 66 | 124 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.9E-12 | 67 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.9E-12 | 105 | 125 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MHMLEKAENK GDGSKSLPKI LAKWKEYNAQ LDSSNDGDKP VRKVPAKGSK KGCMKGKGGP 60 ENSRCNYRGV RQRTWGKWVA EIREPNRGKR LWLGTFATAI GAALAYDEAA RAMYGSSARL 120 NFPNVAVSNF SEESLKDSSV ANDDSGSSMA AVLANTESKV SSNNSGVGTE EDVDMEPISL 180 SLSVKHMNGE DCGV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-18 | 66 | 123 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-18 | 66 | 123 | 5 | 63 | ATERF1 |
3gcc_A | 2e-18 | 66 | 123 | 5 | 63 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.4434 | 0.0 | pod| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0359549.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT147798 | 0.0 | BT147798.1 Lotus japonicus clone JCVI-FLLj-6D10 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019448029.1 | 2e-95 | PREDICTED: putative dehydration-responsive element-binding protein 2H | ||||
Swissprot | A2WL19 | 1e-49 | DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A | ||||
TrEMBL | I3T500 | 1e-136 | I3T500_LOTJA; Uncharacterized protein | ||||
STRING | GLYMA12G32400.1 | 5e-88 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11020.1 | 2e-41 | DRE/CRT-binding protein 2B |