PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0358759.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 329aa    MW: 36419.8 Da    PI: 9.1827
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0358759.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.5e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv +++++G+g+W++++ + g+ R+ k+c++rw +yl
  Lj0g3v0358759.1 14 KGPWTPEEDIILVTYIQEHGPGNWRSVPTKTGLSRCSKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding48.91.5e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E++ ++++  +lG++ W++Ia++++  Rt++++k++w+++l
  Lj0g3v0358759.1  67 RGNFTEQEEKMIIHLQDLLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.4E-25564IPR009057Homeodomain-like
PROSITE profilePS5129426.221965IPR017930Myb domain
SuperFamilySSF466892.49E-3111108IPR009057Homeodomain-like
SMARTSM007173.4E-151363IPR001005SANT/Myb domain
PfamPF002492.4E-161461IPR001005SANT/Myb domain
CDDcd001671.35E-111661No hitNo description
Gene3DG3DSA:1.10.10.608.3E-2565117IPR009057Homeodomain-like
PROSITE profilePS5129420.3666116IPR017930Myb domain
SMARTSM007172.9E-1566114IPR001005SANT/Myb domain
PfamPF002499.7E-1567112IPR001005SANT/Myb domain
CDDcd001672.01E-1069111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MGRPPCCDKE GVKKGPWTPE EDIILVTYIQ EHGPGNWRSV PTKTGLSRCS KSCRLRWTNY  60
LRPGIKRGNF TEQEEKMIIH LQDLLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLKKLQ  120
AGSEGNLGEG FSASSPQRIS RGQWERRLQT DIQMAKIALS EALSPQKPSS SNNNNNPSNS  180
SSTLSSTKPT QSPSCYASSA DNIARLLKGW MKNPPKKRSS RTNSVATQNS FNYNLNAAGT  240
DTASSSGAKG ISSTSAELSE TFESLFGFES LESPNSDQFS PSNLSPERKP DVNVIGPEMP  300
LSLLEKWLLD ECSVNPEKIL GFGDDDKIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-261411658159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-261411658159MYB PROTO-ONCOGENE PROTEIN
1h8a_C3e-261411627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.51680.0floral bud
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in flowers, leaves and weakly in seed pods. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0358759.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312041e-170KT031204.1 Glycine max clone HN_CCL_69 MYB/HD-like transcription factor (Glyma18g49360.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001240154.11e-161MYB transcription factor MYB60
SwissprotP813921e-111MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A371E1I21e-161A0A371E1I2_MUCPR; Transcription factor MYB30
STRINGGLYMA18G49360.11e-161(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101634115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28910.13e-98myb domain protein 30
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]