PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0357719.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

SRS

Protein Properties

Length: 328aa MW: 34756.6 Da PI: 8.4123

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0357719.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	211.8	1.7e-65	114	277	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel..kskkqsalsstklssa 94 gta+CqdCGnqakkdC h+RCR CCksrgfdC thvkstWvpaa+rrerq +++ a++ ++++++ ++k++r ++++++++s+t++s++ Lj0g3v0357719.1 114 GGTATCQDCGNQAKKDCGHRRCRACCKSRGFDCPTHVKSTWVPAARRRERQVMAERAAAAGSSASTSGHAKKPRLVasQTTTTTTTSHTSTSNT 207 5889*********************************************9999998888888899999999987445666777889999999 PP DUF702 95 eskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++++++etss lP++v+++avf+cvrv++vd ge+e+aYq+ v+igGh+fkG+Ly+qG+e+ Lj0g3v0357719.1 208 TPPRSFETSSshqdvsfkesLPRQVRAPAVFKCVRVTAVDGGEDEFAYQAMVKIGGHLFKGLLYNQGVEN 277 ***9999******************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	6.1E-60	116	276	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.6E-26	118	160	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	5.2E-26	228	275	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MWPGASSARP ISYSHVASDM VGLRDVFLVA PASSFNHHSE SLMPDPHLNS SNNPVTALGV 60 GMIPLLGGGI QLWHDQQQQQ QHEQNYLKKH ALVEHDNGDG GGGGITALVA TSGGGTATCQ 120 DCGNQAKKDC GHRRCRACCK SRGFDCPTHV KSTWVPAARR RERQVMAERA AAAGSSASTS 180 GHAKKPRLVA SQTTTTTTTS HTSTSNTTPP RSFETSSSHQ DVSFKESLPR QVRAPAVFKC 240 VRVTAVDGGE DEFAYQAMVK IGGHLFKGLL YNQGVENRDG YPDLSELHLG GRNGVSSSSP 300 MMNPSFDVYV ASGSGGFLGG SSTYGNPI

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed during the early stages of root primordium development and disappears prior to the emergence of lateral roots from the parent root. {ECO:0000269\|PubMed:7647564}.
Uniprot	TISSUE SPECIFICITY: Restricted to lateral root primordia. {ECO:0000269\|PubMed:7647564}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0357719.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007141493.1	1e-113	hypothetical protein PHAVU_008G200700g
Swissprot	Q94CK9	9e-87	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	V7B6F1	1e-111	V7B6F1_PHAVU; Uncharacterized protein
STRING	XP_007141493.1	1e-112	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6504	33	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.4	4e-85	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]