PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0344459.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 358aa    MW: 40084.8 Da    PI: 7.0816
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0344459.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-18177227256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+ ae+Aa a+++ + kl+ge
  Lj0g3v0344459.1 177 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDKAEDAAMAYDREAFKLRGE 227
                      59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.63E-33176236No hitNo description
PROSITE profilePS5103222.392177234IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-22177235IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-31177235IPR001471AP2/ERF domain
SMARTSM003802.9E-39177240IPR001471AP2/ERF domain
PRINTSPR003674.9E-10178189IPR001471AP2/ERF domain
PfamPF008471.9E-11178227IPR001471AP2/ERF domain
PRINTSPR003674.9E-10200216IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MDTAKNSGKS NKEIVDDTSK IIGEGEGKSQ WKPVFDDASK SHRPLKKICS PELQTPNKLS  60
SDISLQPPSS SSVPPSSRIF FPFALEDSQP PMPFPHQSGT TNFSLHRTQQ QIISFEPQQN  120
MGYPQFLAQN SSVPLHQQQK LHHLSPRERV MMMNNRLGAG KRPMFGPPTQ ALNATKLYRG  180
VRQRHWGKWV AEIRLPRNRT RLWLGTFDKA EDAAMAYDRE AFKLRGENAK LNFPHLFLNK  240
DEASSITAPT PSPPFHEGST STTSKQPEPI RQSAPLTGEN ADNDAETGIS QSQELVWGEM  300
ASWFNAIPEG WGPGSLVWDD LDLNSTNLLL QSSQLPFMNQ NQQEFHDGND AQRPGDNC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-20176234160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0344459.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014632295.11e-124ethylene-responsive transcription factor ERF054
TrEMBLA0A0R0JN351e-123A0A0R0JN35_SOYBN; Uncharacterized protein
STRINGGLYMA06G45010.21e-123(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42683258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.13e-57ERF family protein