PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0321259.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | FAR1 | ||||||||
Protein Properties | Length: 240aa MW: 27568.1 Da PI: 8.1363 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 65.2 | 1.7e-20 | 62 | 155 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y+e++k++GFs+r+++++ + + t+r fvC + g++ ++++++k +r+r+++r+gC+a ++++k++ +w+vt + ++HnHel Lj0g3v0321259.1 62 EYYSEFSKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKTSTQSKPQRNRKSSRCGCQAYMRISKTTefgAPEWRVTGFANHHNHELL 155 69*************9998877356667999**************99999*********************9988888**************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.1E-17 | 62 | 155 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MSEEVGSMLV VYDDPSDQHS LSLGDTSSTE ESPDETRLSL ETANAAIPYI GQRFATHDAA 60 YEYYSEFSKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPVKTSTQ SKPQRNRKSS 120 RCGCQAYMRI SKTTEFGAPE WRVTGFANHH NHELLEPNQV RFLPAYRTIS DTDKNRILMF 180 AKTGISVHQM MRLMELEKCV EPGFLPFTEK DIRNLLQSFR KLDPEEESLD LLRMCRNIKE |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0321259.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006588528.1 | 1e-167 | protein FAR1-RELATED SEQUENCE 11 | ||||
Refseq | XP_028184456.1 | 1e-167 | protein FAR1-RELATED SEQUENCE 11 | ||||
Swissprot | Q9SY66 | 1e-146 | FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11 | ||||
TrEMBL | A0A0B2PLU4 | 1e-166 | A0A0B2PLU4_GLYSO; Protein FAR1-RELATED SEQUENCE 11 | ||||
TrEMBL | A0A151T841 | 1e-167 | A0A151T841_CAJCA; Protein FAR1-RELATED SEQUENCE 11 | ||||
TrEMBL | I1L7C4 | 1e-166 | I1L7C4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G00380.1 | 1e-166 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF594 | 30 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10240.1 | 1e-148 | FAR1-related sequence 11 |
Publications ? help Back to Top | |||
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