PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0304669.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

FAR1

Protein Properties

Length: 815aa MW: 94296.2 Da PI: 6.5306

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0304669.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71	2.8e-22	137	223	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y++YA GFsvrk+ +ks+ +g +++r+++C ++g+r +++++ + rr + etrtgC a++++ ++ +gk+ vt++e eHnHe++ Lj0g3v0304669.1 137 CYSKYAVLNGFSVRKDFVNKSRLDGAVMSRRYTCHRQGYRPNKNTT--NLRRIQHETRTGCLAHMTIVRQPNGKFLVTHFEREHNHEFV 223 7*************************************998776..9999*********************************97 PP
2	FAR1	91.4	1.2e-28	270	359	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fYn+YA +vGFsvrk++ ++sk +g + +r+f+C +eg+r+++k++ +++r+r+ tr+gC a+l ++++ d++++vt++e++HnHel+p Lj0g3v0304669.1 270 EFYNTYAGRVGFSVRKDYANRSKVDGAVASRRFTCFREGFRKKDKQD-GNAKRPRKDTRIGCLAQLLISRQPDDRYHVTHFEEKHNHELVP 359 6*****************************************999.9**************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.4E-20	137	223	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	8.5E-26	270	359	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.0E-25	481	574	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.274	760	796	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.3E-6	760	795	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.2E-5	771	798	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 815 aa Download sequence Send to blast
MEDTEPDHMK RPPQQNNAEN ECAISLVVVT NVGQESHSSK DSSAADSNKI IDTQMKRASP 60 NVCPVDHIQI ENDDECQISN TSPDDIFHIN VSSGQLCQNP NTTSISMINT DVENEDQIDM 120 EPQIGMVFES EDHAYKCYSK YAVLNGFSVR KDFVNKSRLD GAVMSRRYTC HRQGYRPNKN 180 TTNLRRIQHE TRTGCLAHMT IVRQPNGKFL VTHFEREHNH EFVSPSASHM LPSQRKLYFA 240 QALETCLVES QLDGVPKLGM RFDSENHAYE FYNTYAGRVG FSVRKDYANR SKVDGAVASR 300 RFTCFREGFR KKDKQDGNAK RPRKDTRIGC LAQLLISRQP DDRYHVTHFE EKHNHELVPP 360 CRVQMLRSQK RSAATEVENN IVNGDGSNLL PNSTAEINCR TVEGFADQDY DPIGYEHKLP 420 FKCTREIKEG EIEKIKDHFQ RKQSKNPSSF YAFQLDAGDQ LTNIFWADSK MIVDYSDFGD 480 VVCFDRSYKF YKDCRPFAPF LGVNNHKQMI IFGAALLYDE SVESLKWLFH VFIEAMSGRK 540 PMTILTDQDA TIAEAINSVL PQTNHRVCVW HIYQDAFKQL TRMSVESDSF VHDLSSCVFN 600 HEEEEDFVNA WNALLGNYNL WDNEWLCEIY ESRERWAIPY GRHVFHADIA NLLRENLTGN 660 LKKHLRNDSD VLSFLKHLGK MVTDWHYKEL EANYDMSQRM PALMGDVVTL KHARDPYTPE 720 IFELFQKEYE ASLNLVVKHC TESGSLYIYK VSIYEQAREY TVTFDSFNEK ISCSCMKFEY 780 LGVLCCHALK VLDYRNIMIV PSQYILKRWT KDARI

Sequence ? help Back to Top

Protein Sequence Length: 815 aa Download sequence Send to blast

MEDTEPDHMK RPPQQNNAEN ECAISLVVVT NVGQESHSSK DSSAADSNKI IDTQMKRASP  60
NVCPVDHIQI ENDDECQISN TSPDDIFHIN VSSGQLCQNP NTTSISMINT DVENEDQIDM  120
EPQIGMVFES EDHAYKCYSK YAVLNGFSVR KDFVNKSRLD GAVMSRRYTC HRQGYRPNKN  180
TTNLRRIQHE TRTGCLAHMT IVRQPNGKFL VTHFEREHNH EFVSPSASHM LPSQRKLYFA  240
QALETCLVES QLDGVPKLGM RFDSENHAYE FYNTYAGRVG FSVRKDYANR SKVDGAVASR  300
RFTCFREGFR KKDKQDGNAK RPRKDTRIGC LAQLLISRQP DDRYHVTHFE EKHNHELVPP  360
CRVQMLRSQK RSAATEVENN IVNGDGSNLL PNSTAEINCR TVEGFADQDY DPIGYEHKLP  420
FKCTREIKEG EIEKIKDHFQ RKQSKNPSSF YAFQLDAGDQ LTNIFWADSK MIVDYSDFGD  480
VVCFDRSYKF YKDCRPFAPF LGVNNHKQMI IFGAALLYDE SVESLKWLFH VFIEAMSGRK  540
PMTILTDQDA TIAEAINSVL PQTNHRVCVW HIYQDAFKQL TRMSVESDSF VHDLSSCVFN  600
HEEEEDFVNA WNALLGNYNL WDNEWLCEIY ESRERWAIPY GRHVFHADIA NLLRENLTGN  660
LKKHLRNDSD VLSFLKHLGK MVTDWHYKEL EANYDMSQRM PALMGDVVTL KHARDPYTPE  720
IFELFQKEYE ASLNLVVKHC TESGSLYIYK VSIYEQAREY TVTFDSFNEK ISCSCMKFEY  780
LGVLCCHALK VLDYRNIMIV PSQYILKRWT KDARI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0304669.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020238083.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_020238084.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_020238085.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_020238086.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A0R0JYC7	0.0	A0A0R0JYC7_SOYBN; Uncharacterized protein
TrEMBL	A0A445KKP0	0.0	A0A445KKP0_GLYSO; Protein FAR1-RELATED SEQUENCE 5
STRING	GLYMA05G06351.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	1e-111	FAR1-related sequence 7