PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0282379.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bZIP
Protein Properties Length: 185aa    MW: 21469.9 Da    PI: 6.2392
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0282379.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_145.81.3e-1476126555
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                      ++ rr+++NRe+ArrsR RK+  ++eL   v  L +eN++L ++l++ ++ 
  Lj0g3v0282379.1  76 RKHRRMISNRESARRSRMRKQRHLDELWSQVVWLRNENHQLLDKLSHASES 126
                      578***************************************888776654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.6E-1472136IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.43874137IPR004827Basic-leucine zipper domain
PfamPF001702.1E-1276126IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.6E-1176149No hitNo description
SuperFamilySSF579594.5E-1376125No hitNo description
CDDcd147024.73E-1777128No hitNo description
PROSITE patternPS0003607994IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MQAREAPGLN YMLPSNPPPY PANYTMIQNN IPTFQFQRFS NQLFQVPDFS PQSSCISSNS  60
TSDEADEQQQ GLINERKHRR MISNRESARR SRMRKQRHLD ELWSQVVWLR NENHQLLDKL  120
SHASESHDQV VQENAQLKEE ALELRQMLRD MQIHSPCPSF APLEDAYLRS DSPNQSISSS  180
MDLLG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18895RRSRMRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.172710.0root
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00389DAPTransfer from AT3G30530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0282379.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1441510.0BT144151.1 Lotus japonicus clone JCVI-FLLj-13H1 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020234398.18e-91basic leucine zipper 43
SwissprotQ9FMC26e-41BZP43_ARATH; Basic leucine zipper 43
TrEMBLI3SUK31e-132I3SUK3_LOTJA; Uncharacterized protein
STRINGGLYMA13G06980.19e-82(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16043399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.17e-56basic leucine-zipper 42
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]