PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0273489.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | GATA | ||||||||
Protein Properties | Length: 246aa MW: 27476.8 Da PI: 8.3838 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.3 | 1e-18 | 176 | 210 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+ kTp+WR gp g+ktLCnaCG+++++ +l Lj0g3v0273489.1 176 CLHCGAEKTPQWRAGPHGPKTLCNACGVRFKSGRL 210 99*****************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.387 | 170 | 206 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 3.7E-16 | 170 | 220 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.75E-15 | 172 | 234 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.0E-14 | 174 | 208 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.37E-14 | 175 | 223 | No hit | No description |
Pfam | PF00320 | 1.1E-16 | 176 | 210 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 176 | 201 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MVMGALGSVD DLLNFSSDIG EEDDDDEKPN KAFPSLNPIC SDPPSFNPSD LNGRSHSVPA 60 YAEEELEWLS NKDAFPAIET FVELSSIHPD LAKHQKAAPK IDYSTSSSNS NNSSNSITLL 120 SGYDHLKVPV RARSRRRSRR RPIIADNSGQ QFWWQQLSNE ICKEEAIKIS TIGRKCLHCG 180 AEKTPQWRAG PHGPKTLCNA CGVRFKSGRL VPEYRPASSP TFRTELHSNS HRKVMEMRKQ 240 KHMGMG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 140 | RARSRRRSRRR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00377 | DAP | Transfer from AT3G24050 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0273489.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027363961.1 | 1e-119 | GATA transcription factor 1 | ||||
Refseq | XP_027363962.1 | 1e-119 | GATA transcription factor 1 | ||||
TrEMBL | A0A1S2Y2H6 | 1e-114 | A0A1S2Y2H6_CICAR; GATA transcription factor 1 | ||||
STRING | GLYMA10G25480.1 | 1e-112 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8537 | 29 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24050.1 | 3e-41 | GATA transcription factor 1 |