PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0271989.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 214aa MW: 24404.1 Da PI: 5.3378 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 21.6 | 2.7e-07 | 1 | 22 | 21 | 42 |
HHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 21 lKKAeELSvLCdaevaviifss 42 +KK EL +LC++e++ ii+s+ Lj0g3v0271989.1 1 MKKVDELTTLCGIEACAIIYSP 22 8*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00319 | 1.3E-5 | 1 | 22 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 5.96E-17 | 1 | 57 | No hit | No description |
SuperFamily | SSF55455 | 9.55E-12 | 1 | 66 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MKKVDELTTL CGIEACAIIY SPFDPQPEVW PSQWGVQNVL ERLKTMPELE QSKKMMNQET 60 FLKQMILKAK DQMAKQKKEN REKEMNLHMF RCINAGKVLP NMTTNDLNDL AWVIDHNLKE 120 VDRMLEKMNN TVIHQGRSSI LAAPSPIQPQ MAPALTVAKT EEMTLVDDVH GLAMNNADAI 180 QRQWYVDLIN GNYGNETMTF GDANPQNGSF WPNP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0271989.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019428473.1 | 2e-79 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A371I5P7 | 3e-69 | A0A371I5P7_MUCPR; Agamous-like MADS-box protein AGL80 (Fragment) | ||||
STRING | XP_007163366.1 | 7e-68 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF452 | 33 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 1e-43 | AGAMOUS-like 80 |