PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0258089.1 | ||||||||
Common Name | NAO1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | WOX | ||||||||
Protein Properties | Length: 338aa MW: 38928.6 Da PI: 8.4779 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 69.8 | 3.4e-22 | 56 | 115 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql++Leel+++ +r+psae++++++++l +++ ++V++WFqN++a+e++ Lj0g3v0258089.1 56 SRWNPTPEQLRALEELYRRgTRTPSAEQIQQITAQLrrfgKIEGKNVFYWFQNHKARERQ 115 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 114.8 | 4.1e-37 | 55 | 117 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L+++Gkie+kNVfyWFQN+kaRerqk+ Lj0g3v0258089.1 55 SSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQKR 117 79***********************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 9.5E-5 | 53 | 120 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-9 | 56 | 115 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 6.4E-20 | 56 | 115 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.41E-12 | 56 | 121 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.38E-6 | 57 | 117 | No hit | No description |
PROSITE profile | PS50071 | 11.451 | 61 | 116 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048513 | Biological Process | animal organ development | ||||
GO:0099402 | Biological Process | plant organ development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MWMVGYNESG AEFNMADYPF NGRKLRPLMP RPIHLLASVT EQNKREFNTP PVVVSSRWNP 60 TPEQLRALEE LYRRGTRTPS AEQIQQITAQ LRRFGKIEGK NVFYWFQNHK ARERQKRRRQ 120 MESEAEGPPR DFESSHHDKK DLGASRTVFE VEQTKNNWPS STNCTSTLAE ESVSIQSAAA 180 KAVVAAECSR TDGWLQFDEG ELQQQRRNFM ERNATWRMMQ FPCPPQPPHF INTPPQYAST 240 TSMATVTAAR LMDQKLIKTH ADLSFFISPH TRENNSIIHL SSFTTEDNVE SQTLQLFPLR 300 NGDGSSENSN QHHKETEISV SAMNAPSQFF EFLPLKKY |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.25890 | 0.0 | pod |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0258089.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ291250 | 0.0 | JQ291250.1 Lotus japonicus NARROW ORGAN 1 (NAO1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003525189.1 | 1e-165 | WUSCHEL-related homeobox 1-like isoform X1 | ||||
Refseq | XP_028234064.1 | 1e-165 | WUSCHEL-related homeobox 1-like isoform X1 | ||||
TrEMBL | J7JYT7 | 0.0 | J7JYT7_LOTJA; NARROW ORGAN 1 | ||||
STRING | GLYMA05G33850.2 | 1e-164 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2892 | 34 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18010.1 | 5e-61 | WUSCHEL related homeobox 1 |
Publications ? help Back to Top | |||
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