PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0256589.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 160aa MW: 18773.1 Da PI: 10.4566 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 54.1 | 2e-17 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n+s r++t+ kR++g++KK ELS+LC++e++ ii+s+ Lj0g3v0256589.1 11 IVNDSARKTTYRKRKKGLIKKVDELSTLCGIEACAIIYSP 50 88************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 16.596 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.1E-22 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.00E-27 | 2 | 85 | No hit | No description |
PRINTS | PR00404 | 8.0E-7 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.49E-24 | 3 | 94 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-16 | 11 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.0E-7 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MARRKVKREY IVNDSARKTT YRKRKKGLIK KVDELSTLCG IEACAIIYSP FEPQPVVWPS 60 PPGVQKALER LKTMPELEQS KKMVNQETFT KQMILKAKDQ MMKQRKENRE KEMNLHMHRC 120 INAGKVQPNM NMNDLNDLAW VIDQNLKEVD RALEKMNKTV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RRKVKREYIVNDSARKTTYRKRK |
2 | 21 | 25 | RKRKK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:16798889}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0256589.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019452067.1 | 9e-70 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
Swissprot | Q9FJK3 | 4e-47 | AGL80_ARATH; Agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A2Z6NZ76 | 1e-68 | A0A2Z6NZ76_TRISU; Uncharacterized protein | ||||
STRING | POPTR_0005s00420.1 | 9e-70 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF452 | 33 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 2e-49 | AGAMOUS-like 80 |
Publications ? help Back to Top | |||
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