PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0252429.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | LBD | ||||||||
Protein Properties | Length: 93aa MW: 10472 Da PI: 9.4864 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 67.8 | 2.4e-21 | 11 | 92 | 1 | 82 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 +C Ck +r++C dC + + fp+++ +f n+ FG sn+l+ lka++++er +++ s++ e+ +r +dPv+G +gv+l+ Lj0g3v0252429.1 11 PCILCKRQRKTCHGDCEFGQFFPSNRYGEFDNACSHFGLSNILHNLKAVQPHERLATAGSILIEGTIRRNDPVRGGLGVVLD 92 799***************************************************************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.644 | 10 | 93 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.5E-20 | 11 | 93 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 93 aa Download sequence Send to blast |
MNRRRIKGSY PCILCKRQRK TCHGDCEFGQ FFPSNRYGEF DNACSHFGLS NILHNLKAVQ 60 PHERLATAGS ILIEGTIRRN DPVRGGLGVV LDL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0252429.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024177704.1 | 4e-23 | LOB domain-containing protein 22-like | ||||
Refseq | XP_027911404.1 | 2e-23 | LOB domain-containing protein 9-like | ||||
TrEMBL | A0A2N9EC89 | 6e-22 | A0A2N9EC89_FAGSY; Uncharacterized protein | ||||
TrEMBL | A0A2P6RKC8 | 1e-22 | A0A2P6RKC8_ROSCH; Putative transcription factor AS2-LOB family | ||||
STRING | XP_006475549.1 | 8e-22 | (Citrus sinensis) | ||||
STRING | XP_006451481.1 | 3e-22 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14432 | 11 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19820.1 | 2e-20 | LOB domain-containing protein 9 |