PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0248869.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WRKY
Protein Properties Length: 370aa    MW: 40713.5 Da    PI: 8.3126
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0248869.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.84.5e-33109167159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+CtsagCpv+k+ver++++ k+v++tYeg+Hnhe
  Lj0g3v0248869.1 109 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCPVRKHVERASHNLKYVITTYEGKHNHE 167
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-3694169IPR003657WRKY domain
SuperFamilySSF1182908.37E-29102169IPR003657WRKY domain
PROSITE profilePS5081137.769104169IPR003657WRKY domain
SMARTSM007741.1E-37109168IPR003657WRKY domain
PfamPF031061.3E-25110167IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MRDTKHRLAW KADGQERTSS ASAMTELADP ISTKRAKPES EDTPEFSSTH ASHGGDADGA  60
TQAVMSLEDD AESESKRRKK ESYTVEAMPP RAVREPRVVV QIESEIDILD DGYRWRKYGQ  120
KVVKGNPNPR SYYKCTSAGC PVRKHVERAS HNLKYVITTY EGKHNHEVPT ARNNNQISSN  180
DGGGANGQAG LTLHGSASIP KPEPHQTLAP HFDRKPDFSN EFLRQGLIGS LGNDLKFGPS  240
SMSQMKYSSL SNTMPYGSYG LNPDRCATPA GSMAAMFPDF PMPLPMNLPS SGSFPLAGIN  300
FNRMKPMGHV QSFLSGQQVK EIDSGFLKPK QEQKDDTMYT TCIPSLDHAN ASLNPSTSPS  360
IYQRVMQNFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-34100169877Probable WRKY transcription factor 4
2lex_A5e-34100169877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0248869.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028213303.10.0WRKY transcription factor SUSIBA2-like
TrEMBLA0A445FX370.0A0A445FX37_GLYSO; Putative WRKY transcription factor 2
STRINGGLYMA18G47741.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83493445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-40WRKY DNA-binding protein 2