PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0244439.1 | ||||||||
Common Name | LjWRKY30 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | WRKY | ||||||||
Protein Properties | Length: 237aa MW: 26907.8 Da PI: 4.8757 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 89.7 | 2.4e-28 | 20 | 81 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK++ g++fpr+YYrCt++ gC+++k+v++s++dp++ ei Y+g+H+++ Lj0g3v0244439.1 20 LDDGYSWRKYGQKDILGAKFPRGYYRCTHRnvqGCQATKQVQKSDKDPTMYEINYRGKHTCT 81 59***************************98999**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.4E-28 | 14 | 82 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.32 | 15 | 78 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.62E-25 | 19 | 82 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-38 | 20 | 82 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.3E-26 | 21 | 80 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MPKWTSQVRV CSGTAIEGSL DDGYSWRKYG QKDILGAKFP RGYYRCTHRN VQGCQATKQV 60 QKSDKDPTMY EINYRGKHTC TQASHANKAS PSTKVKVGLG ENKHHILTHQ KNQPQQEKTE 120 QTQERVLSFG SELELKIEDL DYKEDTFPSF CFSSPSIGSE QEDNNIFSEN NFIESFSPPY 180 ISPATSELVL HTSDFDVTEI ISTPTSVTNY EMIDLDLFLD NMDFDTVFPI NTTELCS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 4e-20 | 19 | 78 | 13 | 74 | Disease resistance protein RRS1 |
5w3x_D | 4e-20 | 19 | 78 | 13 | 74 | Disease resistance protein RRS1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.8106 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0244439.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB378640 | 0.0 | AB378640.1 Lotus japonicus LjWRKY30 mRNA for transcription factor WRKY, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027335908.1 | 1e-116 | probable WRKY transcription factor 53 | ||||
TrEMBL | B3IX40 | 1e-178 | B3IX40_LOTJA; Transcription factor WRKY | ||||
STRING | XP_007135232.1 | 1e-100 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF493 | 34 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24110.1 | 3e-41 | WRKY DNA-binding protein 30 |
Publications ? help Back to Top | |||
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