PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0203079.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | ERF | ||||||||
Protein Properties | Length: 151aa MW: 16255.4 Da PI: 9.7821 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.4 | 2.1e-19 | 24 | 75 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykG+r +k +g+WvAeIr+p + kr r++lg++ t+ Aa+a++ a +l+g Lj0g3v0203079.1 24 TKYKGIRMRK-WGKWVAEIREP---NpKRSRIWLGSYNTPIAAARAYDTAVYCLRG 75 69******99.**********9...8899*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.9E-12 | 24 | 75 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.07E-26 | 24 | 85 | No hit | No description |
PROSITE profile | PS51032 | 22.721 | 25 | 83 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-30 | 25 | 84 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-34 | 25 | 89 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-21 | 25 | 84 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.5E-11 | 26 | 37 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-11 | 65 | 85 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MAGEGRARAA AKKRGSTEGE EETTKYKGIR MRKWGKWVAE IREPNPKRSR IWLGSYNTPI 60 AAARAYDTAV YCLRGPSARL NFPELAGEFA AAAAAATDMW AEPIKKVAAE VGARVDALQL 120 PHQPAPAPAP AAAAADREVV DLNQMPEANN N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-17 | 22 | 84 | 11 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0203079.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 3e-38 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003551002.1 | 4e-54 | ethylene-responsive transcription factor ERF008 | ||||
Refseq | XP_028209839.1 | 4e-54 | ethylene-responsive transcription factor ERF008-like | ||||
Swissprot | Q8W3M3 | 2e-40 | RAP29_ARATH; Ethylene-responsive transcription factor RAP2-9 | ||||
TrEMBL | A0A445G7T6 | 1e-52 | A0A445G7T6_GLYSO; Ethylene-responsive transcription factor ERF008 | ||||
TrEMBL | I1MVU7 | 1e-52 | I1MVU7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G18580.1 | 2e-53 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1290 | 32 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06746.1 | 1e-37 | related to AP2 9 |
Publications ? help Back to Top | |||
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