PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0196179.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family Trihelix
Protein Properties Length: 289aa    MW: 33243.2 Da    PI: 5.217
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0196179.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix52.81e-1621105286
         trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      Wt+qe+  Li+a++e++ +l+rg l+ ++Weev+ ++           ++s+ qC++k+e+l++r++++k++   r       ++yf+ ++
  Lj0g3v0196179.1  21 WTHQETVNLIRAYQEKWYSLKRGPLRSNQWEEVAVVVaarcgyDFAHPSKSALQCRHKIEKLRQRHRAEKHRPATR------PWQYFSLMD 105
                      *************************************8555553333479********************999975......599998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.1792083IPR017877Myb-like domain
PfamPF138378.1E-1720107No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MATPPPPATT SAVKKPQPIP WTHQETVNLI RAYQEKWYSL KRGPLRSNQW EEVAVVVAAR  60
CGYDFAHPSK SALQCRHKIE KLRQRHRAEK HRPATRPWQY FSLMDDLERG PLPISAHPLA  120
SLPPGVDEDE EDDEIEHGGE GDVHDHDDRV NYMKSKSVNY ILKQRSAPSA INATKNRAAF  180
NVWDDEHDDG DDDEVEEEEE EEEEDEGLGM SESGLVLGLT EEIKAFGERF IGLENLKMEM  240
MKETERFRFE MEKKRMRMIL ESQRRVVDSI GRAFGSSSSS KRMKITRPI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.112370.0pod
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0196179.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028207992.11e-101uncharacterized protein LOC114391175
TrEMBLA0A1J7GKJ51e-100A0A1J7GKJ5_LUPAN; Uncharacterized protein
STRINGGLYMA16G14040.21e-100(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100872835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.15e-37Trihelix family protein