PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0182089.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

GRAS

Protein Properties

Length: 568aa MW: 64408.8 Da PI: 4.6239

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0182089.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	111.7	9.4e-35	194	567	13	374
GRAS 13 ssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleav 106 +g+++la+a+L r+s+ ++p+gd+++Rla+y+ + + ++ l+ + s++ al++f++ P k++ ++a +aIleav Lj0g3v0182089.1 194 GKGQNSLAEAILRRMSQKVNPRGDSLERLASYLSQDMTNHGDY--------LRGE-----ASKNFGDALRVFHQGVPHRKIADFAAISAILEAV 274 467899************************87777766544........3333.....356888999********************* PP GRAS 107 ege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvlvakrledl..ele 192 ++ + +HiiDf +++G+QW+++++++a+ sl++T + e++ + eet+++L + A+++g++++ + krle+l e++ Lj0g3v0182089.1 275 PEDcDGIHIIDFYLGHGAQWAPMIETIAKF---HKSLKLTSIRLDEESpecvsTPLNFEETRRQLYEHAKSCGLKLKVEE---KRLEELvgEIK 362 7766********************95...567**9877778888888899**************9887...89999955566 PP GRAS 193 eLrvkp..gEalaVnlvlqlhrll............desvsleserdevLklvkslsPk.....vvvvveqe...adh.nsesFlerflealey 263 +++ k +E la n+++ l l + +++ e+Lk+ +l + +++ + + + n+ +F + l + Lj0g3v0182089.1 363 KMKKKGgrREFLAFNCMVGLLDLSdarlvsplqstsTQVWRKREQAMEFLKVAEDLINTsdckgIITSGDGDafeK-MkNNCDFRSFIEGHLVH 455 665555889**********99999999887653333333356778888887744223344899999884322.35888999999999* PP GRAS 264 ysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvk.sdgyrve.e 353 y a ++s+ + pr seer+ +E ++ v+ ++ + + +e+++ W e+ + ++ +ls+++ +a+ +l+ + s + r+e + Lj0g3v0182089.1 456 YQAWLESIeSHFTPRFSEERTAIEVL-FEAPCVSSLSLLKLK--TWEEKKKDWDLHQEQmMSLEGCRLSNNILLEAREVLNGSEgSYEARIEgQ 546 ******445567777888888876.777666666666655..4568889999776654899*****************8888999945 PP GRAS 354 esgslvlgWkdrpLvsvSaWr 374 + + lvl Wk+ +L+ +S W+ Lj0g3v0182089.1 547 SGNVLVLEWKGTQLLRLSTWK 567 566677************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	17.632	156	545	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.3E-32	194	567	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 568 aa Download sequence Send to blast
MMQSEILHQS PWSFYEGMDS IFDQVLEPYQ LFTMDDHVVG DCVFNSTMLS TPQDTVSEVF 60 SIPSPSTIFT NDLIQYPIDE DTLQLPSLME LDGFEFDANL SSQIANIFGH GYPEESEGTH 120 FPQPQFKTLE ESFPLQGSPS EVEDSWSPPM SLRSEISFSS SIQQPSLNLP QEGMEICNQV 180 SLPHLMEAYV ETKGKGQNSL AEAILRRMSQ KVNPRGDSLE RLASYLSQDM TNHGDYLRGE 240 ASKNFGDALR VFHQGVPHRK IADFAAISAI LEAVPEDCDG IHIIDFYLGH GAQWAPMIET 300 IAKFHKSLKL TSIRLDEESP ECVSTPLNFE ETRRQLYEHA KSCGLKLKVE EKRLEELVGE 360 IKKMKKKGGR REFLAFNCMV GLLDLSDARL VSPLQSTSTQ VWRKREQAME FLKVAEDLIN 420 TSDCKGIITS GDGDAFEKMK NNCDFRSFIE GHLVHYQAWL ESIESHFTPR FSEERTAIEV 480 LFEAPCVSSL SLLKLKTWEE KKKDWDLHQE QMMSLEGCRL SNNILLEARE VLNGSEGSYE 540 ARIEGQSGNV LVLEWKGTQL LRLSTWKN

Sequence ? help Back to Top

Protein Sequence Length: 568 aa Download sequence Send to blast

MMQSEILHQS PWSFYEGMDS IFDQVLEPYQ LFTMDDHVVG DCVFNSTMLS TPQDTVSEVF  60
SIPSPSTIFT NDLIQYPIDE DTLQLPSLME LDGFEFDANL SSQIANIFGH GYPEESEGTH  120
FPQPQFKTLE ESFPLQGSPS EVEDSWSPPM SLRSEISFSS SIQQPSLNLP QEGMEICNQV  180
SLPHLMEAYV ETKGKGQNSL AEAILRRMSQ KVNPRGDSLE RLASYLSQDM TNHGDYLRGE  240
ASKNFGDALR VFHQGVPHRK IADFAAISAI LEAVPEDCDG IHIIDFYLGH GAQWAPMIET  300
IAKFHKSLKL TSIRLDEESP ECVSTPLNFE ETRRQLYEHA KSCGLKLKVE EKRLEELVGE  360
IKKMKKKGGR REFLAFNCMV GLLDLSDARL VSPLQSTSTQ VWRKREQAME FLKVAEDLIN  420
TSDCKGIITS GDGDAFEKMK NNCDFRSFIE GHLVHYQAWL ESIESHFTPR FSEERTAIEV  480
LFEAPCVSSL SLLKLKTWEE KKKDWDLHQE QMMSLEGCRL SNNILLEARE VLNGSEGSYE  540
ARIEGQSGNV LVLEWKGTQL LRLSTWKN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0182089.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027351331.1	0.0	nodulation-signaling pathway 2 protein-like
TrEMBL	A0A445FVW4	0.0	A0A445FVW4_GLYSO; Nodulation-signaling pathway 2 protein
STRING	GLYMA18G43580.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4274	27	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	2e-10	RGA-like 1