PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0172009.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WOX
Protein Properties Length: 146aa    MW: 16918.9 Da    PI: 9.4545
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0172009.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox70.42.1e-2285144357
                      --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                      +R+++t+eql++Le+l+   +r+psae++e+++++l    +++ ++V++WFqN++a+e++
  Lj0g3v0172009.2  85 SRWNPTPEQLRALEDLYSGgTRTPSAEQIEHITAQLrrfgKIEGKNVFYWFQNHKARERQ 144
                      7*****************99**************************************97 PP
2Wus_type_Homeobox114.84.1e-3784146365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+PtpeQ++ Le+ly+ G+rtP++e+i++ita+L+++Gkie+kNVfyWFQN+kaRerqk+
    Lj0g3v0172009.2  84 SSRWNPTPEQLRALEDLYSGGTRTPSAEQIEHITAQLRRFGKIEGKNVFYWFQNHKARERQKR 146
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.67E-1285144IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-985144IPR009057Homeodomain-like
PfamPF000464.2E-2085144IPR001356Homeobox domain
CDDcd000861.24E-686146No hitNo description
PROSITE profilePS5007110.68990145IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MWMVGYNEGG EFNMADHSFS GKKTRPFMPM PMASPNNALT TTTSIHGNTF FSQYHHYHHH  60
HQAILGEQQS KRDECNDGTP VVVSSRWNPT PEQLRALEDL YSGGTRTPSA EQIEHITAQL  120
RRFGKIEGKN VFYWFQNHKA RERQKR
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Specifically expressed during initiation of the shoot apical meristem, when cotyledonary primordia arise at the flanks of the apical embryo domain phase. Confined to the initiating vascular primordium of the cotyledons during heart and torpedo stages, but only weakly expressed during bent cotyledon stage. {ECO:0000269|PubMed:14711878}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0172009.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027359305.16e-69WUSCHEL-related homeobox 1-like
SwissprotQ6X7K03e-42WOX1_ARATH; WUSCHEL-related homeobox 1
TrEMBLA0A371EDN67e-66A0A371EDN6_MUCPR; WUSCHEL-related homeobox 1 (Fragment)
STRINGAET055832e-64(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.19e-45WUSCHEL related homeobox 1
Publications ? help Back to Top
  1. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]