PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0168929.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family HD-ZIP
Protein Properties Length: 329aa    MW: 37231 Da    PI: 4.6276
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0168929.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.26.6e-1961114356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k+++++ +q+++Le+ Fe ++++  +++ +LA++lgL+ rqV vWFqNrRa++k
  Lj0g3v0168929.1  61 KKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWK 114
                      566899***********************************************9 PP
2HD-ZIP_I/II129.99.9e-4260152193
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      ekkrrls +qvk+LE++Fe e+kLep+rKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++y+alk ++++L++++e+L +e+ke
  Lj0g3v0168929.1  60 EKKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYEALKLNHDSLQRDNEALLNEIKE 152
                      69**************************************************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.54E-1944118IPR009057Homeodomain-like
PROSITE profilePS5007117.42756116IPR001356Homeobox domain
SMARTSM003895.2E-1859120IPR001356Homeobox domain
CDDcd000861.72E-1661117No hitNo description
PfamPF000464.9E-1661114IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.8E-2063123IPR009057Homeodomain-like
PRINTSPR000319.5E-68796IPR000047Helix-turn-helix motif
PROSITE patternPS00027091114IPR017970Homeobox, conserved site
PRINTSPR000319.5E-696112IPR000047Helix-turn-helix motif
PfamPF021832.4E-17116157IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MKRLGRSDSL GALMKICPPT TDENLSPRSN HNHVYGREFQ SMLEGLDEEG CVEEPGHHSE  60
KKRRLSVDQV KALEKNFEVE NKLEPDRKVK LAQELGLQPR QVAVWFQNRR ARWKTKQLER  120
DYGVLKANYE ALKLNHDSLQ RDNEALLNEI KELKSRVQEE NNNNTESDAY VKEEMITPQD  180
MTPLSETAIP GSDSKELSYD CCFKSSDDGV DGTTTASLFA ENLKDGSSDS DSSAILNEDN  240
NSPNAAISSS GVLQSHDFFI SPGSSSLKFN CSSSSSPSSM SCFQFQKQYH PAQYVKMEEH  300
NFLSADEACN FFSDEQPPTL QWYCQEEWN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108116RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.32701e-165cell culture| floral bud| pod| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00051PBMTransfer from AT4G40060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0168929.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027363901.11e-173homeobox-leucine zipper protein ATHB-6-like
TrEMBLA0A445KPS81e-158A0A445KPS8_GLYSO; Homeobox-leucine zipper protein ATHB-16 isoform A
STRINGXP_004504111.11e-155(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.12e-81homeobox protein 16